Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY54_RS19575 Genome accession   NZ_CP087180
Coordinates   4261510..4262145 (-) Length   211 a.a.
NCBI ID   WP_176794233.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-032     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4256510..4267145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY54_RS19545 (LOY54_19525) murB 4257607..4258626 (-) 1020 WP_258607638.1 UDP-N-acetylmuramate dehydrogenase -
  LOY54_RS19550 (LOY54_19530) - 4258623..4259087 (-) 465 WP_045195182.1 low molecular weight protein-tyrosine-phosphatase -
  LOY54_RS19555 (LOY54_19535) kdsB 4259087..4259851 (-) 765 WP_045195184.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY54_RS19560 (LOY54_19540) - 4259848..4260033 (-) 186 WP_038994143.1 Trm112 family protein -
  LOY54_RS19565 (LOY54_19545) lpxK 4260072..4261082 (-) 1011 WP_258607639.1 tetraacyldisaccharide 4'-kinase -
  LOY54_RS19570 (LOY54_19550) - 4261082..4261513 (-) 432 WP_045195189.1 biopolymer transporter ExbD -
  LOY54_RS19575 (LOY54_19555) exbB 4261510..4262145 (-) 636 WP_176794233.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY54_RS19580 (LOY54_19560) comA 4262216..4264438 (-) 2223 WP_258607640.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY54_RS19585 (LOY54_19565) - 4264582..4265124 (+) 543 WP_045195193.1 DUF2062 domain-containing protein -
  LOY54_RS19590 (LOY54_19570) - 4265092..4265871 (-) 780 WP_045195195.1 ABC transporter permease -
  LOY54_RS19595 (LOY54_19575) - 4265868..4266800 (-) 933 WP_045195197.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.07 Da        Isoelectric Point: 6.8759

>NTDB_id=627460 LOY54_RS19575 WP_176794233.1 4261510..4262145(-) (exbB) [Pseudomonas sp. B21-032]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627460 LOY54_RS19575 WP_176794233.1 4261510..4262145(-) (exbB) [Pseudomonas sp. B21-032]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCTTGCGCGCCAGCCGGGTCACGCCACCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AACAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAAGAGGCCGCAGCGCGTGTCATTCACGAGCTGGAGCGCTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTCGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGTACCGGCATGACCACCAATGCCGCAGTGCTCGCCGGCGGTATCTCCAAGGCACTGATCACCACCGCG
GCCGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAGCGTCGTATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853