Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY33_RS18130 Genome accession   NZ_CP087178
Coordinates   4031556..4033778 (-) Length   740 a.a.
NCBI ID   WP_258659476.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-036     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4026556..4038778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY33_RS18095 (LOY33_18075) murB 4026956..4027975 (-) 1020 WP_100634421.1 UDP-N-acetylmuramate dehydrogenase -
  LOY33_RS18100 (LOY33_18080) - 4027972..4028436 (-) 465 WP_116055114.1 low molecular weight protein-tyrosine-phosphatase -
  LOY33_RS18105 (LOY33_18085) kdsB 4028436..4029200 (-) 765 WP_043862888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY33_RS18110 (LOY33_18090) - 4029197..4029382 (-) 186 WP_003247142.1 Trm112 family protein -
  LOY33_RS18115 (LOY33_18095) lpxK 4029420..4030430 (-) 1011 WP_258659475.1 tetraacyldisaccharide 4'-kinase -
  LOY33_RS18120 (LOY33_18100) - 4030430..4030861 (-) 432 WP_078479738.1 biopolymer transporter ExbD -
  LOY33_RS18125 (LOY33_18105) exbB 4030858..4031493 (-) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY33_RS18130 (LOY33_18110) comA 4031556..4033778 (-) 2223 WP_258659476.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY33_RS18135 (LOY33_18115) - 4033919..4034458 (+) 540 WP_043862892.1 DUF2062 domain-containing protein -
  LOY33_RS18140 (LOY33_18120) - 4034426..4035205 (-) 780 WP_058541067.1 ABC transporter permease -
  LOY33_RS18145 (LOY33_18125) - 4035202..4036134 (-) 933 WP_043862894.1 ABC transporter ATP-binding protein -
  LOY33_RS18150 (LOY33_18130) - 4036279..4036902 (-) 624 WP_258659477.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79770.19 Da        Isoelectric Point: 10.6388

>NTDB_id=627413 LOY33_RS18130 WP_258659476.1 4031556..4033778(-) (comA) [Pseudomonas sp. B21-036]
MRTRMLALALGLLALNVLPALPSVGWLWGIGMTGMLCLVCRWAVPGLFLLGFAWACCSAQWALDDRLRPELEGRTLWLEG
RVVGLAQQGPHSVRFELAEASSRRAQLPQRLSLSWFGGPPVNSGERWRLAVQLQRPSGLLNPHGPDQEAAMLARRIGATG
RVRAGERLAPASHAWRDSVRQRLLGAQAHGREGALAALVLGDGGALAQEDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARVGAWPRALPWLPWACGLAFAAALAYGLMAGFQVPVRRACIMLAVVLLWRLRFRHLGAWIPLLLALNGVLLVEPL
ASLQPGFWLSFAAVAVLVYVFGGRLGGWNPWLAWCRGQWLIAIGLLPVLLALGLLISLSAPLANLVAVPWVSIAVLPLAL
AGTLLQGLPLLGEALLWLAGGSLAALFWTLAQVAHWQPAWTPVALPIWAWLMVGGGAVLLLLPGGLPMRVLGWPLLLLAG
CAPRNEIAHGQLEVWQLDVGQGQAFVLRTRHHAMLYDAGPATRGSDLGERVVVPTLRKLGVRELDLALISHAHADHAGGA
LAVQRSVPLVRVVGGDPDELPGQLQAQACASGEQWQWDGVLFSLWRWQQAGDSNQRSCVLHVDAGGETLLLTGDIDAQAE
RAWLRESTAGPVDWLQAPHHGSRTSSSQAFLERTRPRGVLISRGRHNAFGHPHAQVMARYQALGITVHDSALHGAVRLVL
GSFGQAVGQRSQRRFWREPT

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=627413 LOY33_RS18130 WP_258659476.1 4031556..4033778(-) (comA) [Pseudomonas sp. B21-036]
ATGCGCACAAGGATGTTGGCGCTGGCCTTGGGGCTGTTGGCGCTCAACGTGTTACCTGCCTTGCCGTCGGTCGGCTGGCT
CTGGGGCATCGGCATGACGGGAATGTTATGCCTGGTGTGTCGATGGGCAGTGCCCGGTCTGTTCCTGCTTGGTTTTGCCT
GGGCCTGTTGCTCGGCGCAATGGGCGCTGGACGATCGACTCCGGCCCGAGCTGGAGGGGCGCACCCTGTGGCTGGAAGGT
CGGGTAGTGGGCCTGGCGCAGCAGGGCCCACATTCGGTGCGTTTCGAGCTGGCCGAAGCCTCCTCGCGCCGCGCCCAGTT
GCCGCAGCGGCTGAGCCTGAGCTGGTTTGGCGGGCCGCCGGTCAACAGTGGCGAGCGTTGGCGCCTGGCGGTACAGCTGC
AGCGCCCCTCCGGCCTGCTCAACCCCCATGGGCCTGACCAGGAAGCCGCCATGCTGGCCCGGCGAATCGGTGCCACCGGC
CGTGTAAGGGCAGGTGAACGACTGGCCCCGGCCAGCCATGCGTGGCGTGATTCGGTGCGCCAGCGCCTGCTCGGGGCTCA
GGCCCATGGGCGCGAAGGTGCGCTGGCGGCGCTGGTGCTGGGTGACGGCGGGGCGCTGGCACAGGAGGACTGGCAGGTGC
TCCAGGCAACCGGCACGGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTGGCCGGTCTGGTGTACGGCCTG
GTGGCCGGGTTGGCACGTGTGGGGGCATGGCCCAGGGCGCTGCCCTGGCTACCCTGGGCGTGCGGCCTGGCGTTTGCGGC
GGCCCTGGCGTACGGCTTGATGGCGGGCTTTCAGGTACCGGTACGACGCGCCTGCATCATGCTGGCGGTGGTGCTGTTGT
GGCGCCTGCGTTTTCGCCACCTTGGGGCCTGGATTCCCTTGCTGCTTGCCCTCAACGGTGTATTGCTGGTGGAGCCATTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTCGCAGCGGTGGCGGTGCTGGTGTATGTGTTCGGCGGCCGGCTGGGGGG
CTGGAACCCCTGGCTGGCATGGTGCCGGGGCCAATGGCTGATCGCGATCGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCTGATCAGTCTCTCGGCACCGCTGGCCAATCTGGTTGCGGTGCCCTGGGTCAGTATCGCGGTGTTGCCCCTGGCGCTG
GCCGGCACACTGCTGCAGGGGCTCCCGTTGCTGGGGGAGGCCCTGTTGTGGCTGGCTGGAGGATCGCTGGCAGCCTTGTT
CTGGACACTGGCACAGGTGGCACATTGGCAACCGGCCTGGACACCGGTCGCCTTGCCGATATGGGCATGGTTGATGGTGG
GCGGTGGCGCGGTACTGCTGCTGTTGCCGGGCGGGCTGCCGATGCGGGTGCTGGGCTGGCCCTTGCTGCTGCTGGCCGGC
TGTGCGCCTCGCAACGAGATCGCCCATGGGCAACTGGAGGTGTGGCAGCTGGATGTCGGCCAGGGCCAGGCGTTTGTGCT
GCGTACCCGTCACCATGCGATGCTGTATGACGCAGGCCCGGCCACCCGTGGCAGCGACCTGGGTGAGCGGGTGGTCGTGC
CGACTCTGCGCAAGCTGGGGGTGCGCGAGCTGGACCTGGCGCTGATCAGCCATGCCCATGCCGACCATGCCGGCGGCGCC
CTGGCGGTGCAGCGCAGCGTGCCGCTGGTGCGCGTGGTGGGCGGCGACCCGGATGAGCTGCCCGGGCAACTGCAGGCCCA
GGCCTGCGCCAGTGGCGAGCAATGGCAGTGGGATGGCGTGCTCTTCAGCCTGTGGCGCTGGCAGCAGGCCGGCGACAGCA
ATCAGCGCTCCTGTGTGTTGCACGTGGATGCCGGCGGGGAAACCCTGCTGCTGACCGGTGACATCGATGCCCAGGCCGAG
CGCGCCTGGCTGCGCGAGTCGACAGCCGGCCCGGTCGACTGGTTGCAGGCGCCCCATCATGGCAGCCGCACCTCGTCGAG
CCAGGCCTTTCTCGAGCGAACCCGGCCACGGGGCGTGCTGATTTCGCGAGGGCGCCACAATGCATTCGGGCATCCGCACG
CACAGGTGATGGCGCGTTACCAGGCGCTGGGTATCACCGTGCACGACAGCGCCCTGCACGGGGCGGTGCGCCTGGTGCTG
GGCAGCTTTGGCCAGGCGGTCGGGCAACGCAGCCAGCGGCGCTTCTGGCGGGAGCCGACATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.162

0.581
  comA Ralstonia pseudosolanacearum GMI1000

34.056

100

0.361