Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY33_RS18125 Genome accession   NZ_CP087178
Coordinates   4030858..4031493 (-) Length   211 a.a.
NCBI ID   WP_162484877.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-036     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4025858..4036493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY33_RS18095 (LOY33_18075) murB 4026956..4027975 (-) 1020 WP_100634421.1 UDP-N-acetylmuramate dehydrogenase -
  LOY33_RS18100 (LOY33_18080) - 4027972..4028436 (-) 465 WP_116055114.1 low molecular weight protein-tyrosine-phosphatase -
  LOY33_RS18105 (LOY33_18085) kdsB 4028436..4029200 (-) 765 WP_043862888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY33_RS18110 (LOY33_18090) - 4029197..4029382 (-) 186 WP_003247142.1 Trm112 family protein -
  LOY33_RS18115 (LOY33_18095) lpxK 4029420..4030430 (-) 1011 WP_258659475.1 tetraacyldisaccharide 4'-kinase -
  LOY33_RS18120 (LOY33_18100) - 4030430..4030861 (-) 432 WP_078479738.1 biopolymer transporter ExbD -
  LOY33_RS18125 (LOY33_18105) exbB 4030858..4031493 (-) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY33_RS18130 (LOY33_18110) comA 4031556..4033778 (-) 2223 WP_258659476.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY33_RS18135 (LOY33_18115) - 4033919..4034458 (+) 540 WP_043862892.1 DUF2062 domain-containing protein -
  LOY33_RS18140 (LOY33_18120) - 4034426..4035205 (-) 780 WP_058541067.1 ABC transporter permease -
  LOY33_RS18145 (LOY33_18125) - 4035202..4036134 (-) 933 WP_043862894.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22901.00 Da        Isoelectric Point: 7.3618

>NTDB_id=627412 LOY33_RS18125 WP_162484877.1 4030858..4031493(-) (exbB) [Pseudomonas sp. B21-036]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWRWIKDKQLTSEKLKTLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627412 LOY33_RS18125 WP_162484877.1 4030858..4031493(-) (exbB) [Pseudomonas sp. B21-036]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGTGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGCGCTGGATCAAGGACA
AGCAGCTCACCAGCGAGAAGCTCAAGACCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTGGCCGCGGGCCTGGCCAAC
TCCCGCCATGGTCGCGAAATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGTGTCATCCACGAGCTGGAGCGCTACAT
CAACGCACTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCCTTTACCGGGTCCGGCATGACCACCAATGCCTCGGTATTGGCGGGGGGGATCTCCAAGGCATTGATCACCACGGCA
GCCGGCCTGATGGTGGGTATCCCGGCGGTATTCTTCCATCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTGGAAGTGGTCCAGGGGGACCGTGATGTCGACCTGAGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858