Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LOY57_RS22515 Genome accession   NZ_CP087177
Coordinates   5139619..5140965 (+) Length   448 a.a.
NCBI ID   WP_083353593.1    Uniprot ID   -
Organism   Pseudomonas moraviensis strain B21-039     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5134619..5145965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY57_RS22490 (LOY57_22445) pgeF 5134834..5135556 (-) 723 WP_258639258.1 peptidoglycan editing factor PgeF -
  LOY57_RS22495 (LOY57_22450) rluD 5135553..5136515 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY57_RS22500 (LOY57_22455) - 5136667..5137683 (+) 1017 WP_064364119.1 outer membrane protein assembly factor BamD -
  LOY57_RS22505 (LOY57_22460) - 5137810..5138043 (+) 234 WP_039761661.1 PP0621 family protein -
  LOY57_RS22510 (LOY57_22465) pilS 5138033..5139622 (+) 1590 WP_116658819.1 PAS domain-containing sensor histidine kinase Regulator
  LOY57_RS22515 (LOY57_22470) pilR 5139619..5140965 (+) 1347 WP_083353593.1 sigma-54 dependent transcriptional regulator Regulator
  LOY57_RS22520 (LOY57_22475) thiO 5141054..5142154 (-) 1101 WP_258639262.1 glycine oxidase ThiO -
  LOY57_RS22525 (LOY57_22480) - 5142212..5142613 (-) 402 WP_227973093.1 type IV pilin protein -
  LOY57_RS22530 (LOY57_22485) - 5142629..5145718 (-) 3090 WP_258639265.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50098.46 Da        Isoelectric Point: 6.5117

>NTDB_id=627392 LOY57_RS22515 WP_083353593.1 5139619..5140965(+) (pilR) [Pseudomonas moraviensis strain B21-039]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRAPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRMPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCEQRTIEAQDLRLSEGNCAADGATADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=627392 LOY57_RS22515 WP_083353593.1 5139619..5140965(+) (pilR) [Pseudomonas moraviensis strain B21-039]
TTGAATACAAGCCCACGGCAAAAAATTCTTATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCGCGCAACCTGGGCGAGGCTCAGGCGCTGTTACAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTACAACACATCCAGCAGCGCGCTCCGCATCTGCCG
GTGGCGATGATCACCGCGTACGGAAGCCTGGAAACGGCTATCAATGCGCTGAAGGCCGGCGCGTTCGATTTCCTCACCAA
ACCAGTGGAGCTGCCGCGACTGCGCGAACTGGTCAGTTCGGCGCTGCGCATGCCGACAGCCGGTGGCCTGAGTACGGCAA
TCGAGCGACGCTTGCTGGGCGACTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCGCGCAGCCAGGCG
CCGGTGTACATCAGCGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCACGCCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCCTTTGTGCCGGTGAACTGCGGGGCGATTCCGTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCA
GTTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTGTTCCAGGCGGCACACGGCGGCACGTTGTTTCTCGATGAAGTCGCC
GATCTGCCACTGCCGATGCAGGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGCATCCTGTGCGCCACACACAAAGACCTTGAAGCGGAAGTCGCGGCCGAGCGCTTCCGTCAGG
ATCTGTATTACCGGCTCAACGTCATTGAACTGCGCGTGCCCTCCCTGCGAGAACGTCGCGACGACATCGAGGCGCTCGCC
ATGCATGTGCTCAAGCGTCTGGCCAAGGACACTGGACAACCCGAAGCGCGCCTGCATCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTCCTCGAACGCGCGCACACCTTGTGTGAACAGCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGAAATTGCGCCGCGGATGGGGCGACGGCTGATCTGACGCAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAGCGCAAACTCATTCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGTTATCGGCTGAAGAAGTTGGGTCTGGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.33

98.884

0.775
  pilR Acinetobacter baumannii strain A118

49.02

100

0.502