Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY57_RS22510 Genome accession   NZ_CP087177
Coordinates   5138033..5139622 (+) Length   529 a.a.
NCBI ID   WP_116658819.1    Uniprot ID   A0A2U1R5F2
Organism   Pseudomonas moraviensis strain B21-039     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5133033..5144622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY57_RS22490 (LOY57_22445) pgeF 5134834..5135556 (-) 723 WP_258639258.1 peptidoglycan editing factor PgeF -
  LOY57_RS22495 (LOY57_22450) rluD 5135553..5136515 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY57_RS22500 (LOY57_22455) - 5136667..5137683 (+) 1017 WP_064364119.1 outer membrane protein assembly factor BamD -
  LOY57_RS22505 (LOY57_22460) - 5137810..5138043 (+) 234 WP_039761661.1 PP0621 family protein -
  LOY57_RS22510 (LOY57_22465) pilS 5138033..5139622 (+) 1590 WP_116658819.1 PAS domain-containing sensor histidine kinase Regulator
  LOY57_RS22515 (LOY57_22470) pilR 5139619..5140965 (+) 1347 WP_083353593.1 sigma-54 dependent transcriptional regulator Regulator
  LOY57_RS22520 (LOY57_22475) thiO 5141054..5142154 (-) 1101 WP_258639262.1 glycine oxidase ThiO -
  LOY57_RS22525 (LOY57_22480) - 5142212..5142613 (-) 402 WP_227973093.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58625.22 Da        Isoelectric Point: 6.9043

>NTDB_id=627391 LOY57_RS22510 WP_116658819.1 5138033..5139622(+) (pilS) [Pseudomonas moraviensis strain B21-039]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFVLSFSHPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVDRLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQATER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627391 LOY57_RS22510 WP_116658819.1 5138033..5139622(+) (pilS) [Pseudomonas moraviensis strain B21-039]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCTCAGCGTCTGCTGCGCCTTTATCACCTGTACCGCTTGAGTGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GTGGCAGCTGGCTGTATCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAACTGTTC
ACTTTAGCGTTGGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCCGCTGGCGGCGTCGCCAGTGCGCTGGGCAATCT
GCTGGTCGTCTCGGTGGCGATCAGCAATACCCTGCTGCGCCGGCGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGCTTTGTGCTGAGCTTCAGCCATCCCCTCAGCGCCAACGCCTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTTGCCGCCTCGTTGCTGGTGCAAGGGCTGATCCGCCGCCTCGAAGTCAGTGAAACCCTCGCCGAACAGCG
CGCCAGTGAAGTGGTTGGCCTGGAAGCGCTCAACGCGTTGATCCTGCAACGCATGCGCACTGGCATTCTGGTGCTCGATG
AGCAACGCCGGGTGCAACTGGCCAATCACAGCGCGCAGAGCCTGCTCGGCCATAGCCACCTGCAAGGTCATTTGATCGAT
GAGTATTCGCCCGCGCTGGTCGATCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAACGGCCTCGAGCTGCAACCAAGCTTCATCGCCCTCGAGCAGAGCCCGAACCAGCAGACCCTGGTGTTTCTCGAAG
ATCTGGCGCAAATCACTCAACAGGCGCAGCAACTCAAACTCGCTGCGCTCGGGCGTTTGACCGCGGGCATCTCCCACGAA
ATTCGCAATCCGTTGGGCGCAATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAATTGTCCCGCCGTCAGC
AAAGCGCACCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCACCGAGCGC
CAGCACATTCATCTACGGATCAATTCGGGCGACTTCACCACGCTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATACGCAACGCCTGGCGGCACAGTGCCCAGTTGCACGAGCAGGCCGAGGTCTGGCTGGCGCTGTTCGTCGACCCCG
ACAGCCAGTTGGCAGTACTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGACGAGCAGGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U1R5F2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599