Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | LOY55_RS26160 | Genome accession | NZ_CP087176 |
| Coordinates | 5714342..5715682 (+) | Length | 446 a.a. |
| NCBI ID | WP_109786291.1 | Uniprot ID | A0A2V2AFY1 |
| Organism | Pseudomonas sp. B21-040 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5709342..5720682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY55_RS26135 (LOY55_26095) | pgeF | 5709547..5710272 (-) | 726 | WP_223522732.1 | peptidoglycan editing factor PgeF | - |
| LOY55_RS26140 (LOY55_26100) | rluD | 5710269..5711231 (-) | 963 | WP_046028527.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| LOY55_RS26145 (LOY55_26105) | - | 5711383..5712405 (+) | 1023 | WP_046028529.1 | outer membrane protein assembly factor BamD | - |
| LOY55_RS26150 (LOY55_26110) | - | 5712527..5712760 (+) | 234 | WP_046028530.1 | PP0621 family protein | - |
| LOY55_RS26155 (LOY55_26115) | pilS | 5712750..5714339 (+) | 1590 | WP_223522747.1 | PAS domain-containing sensor histidine kinase | Regulator |
| LOY55_RS26160 (LOY55_26120) | pilR | 5714342..5715682 (+) | 1341 | WP_109786291.1 | sigma-54 dependent transcriptional regulator | Regulator |
| LOY55_RS26165 (LOY55_26125) | thiO | 5715704..5716804 (-) | 1101 | WP_223522731.1 | glycine oxidase ThiO | - |
| LOY55_RS26170 (LOY55_26130) | - | 5716861..5717262 (-) | 402 | WP_223522730.1 | type IV pilin protein | - |
| LOY55_RS26175 (LOY55_26135) | - | 5717277..5720369 (-) | 3093 | WP_223522729.1 | pilus assembly protein | - |
Sequence
Protein
Download Length: 446 a.a. Molecular weight: 49795.15 Da Isoelectric Point: 6.8808
>NTDB_id=627363 LOY55_RS26160 WP_109786291.1 5714342..5715682(+) (pilR) [Pseudomonas sp. B21-040]
MSPRPKVLIVDDEPDIRELLEITLGRMKLDTFSARNVGDAQALLARETFDLCLTDMRLPDGTGLELVQHIQQRYPQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTASDRRLLGDSLPMRSLRKHIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAHHPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKRGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGESQETVVDVRILCATHKDLDAEVFAERFRQDLYYRLNVIELPVPPLRERRDDIEPLASH
VLKRLAASSGQPAAKLHPLALEALKSYRFPGNVRELENVLERAYTLCENKQIEASDLRLAEGNCTAETGVPDLTQIDNLE
HYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKFGLD
MSPRPKVLIVDDEPDIRELLEITLGRMKLDTFSARNVGDAQALLARETFDLCLTDMRLPDGTGLELVQHIQQRYPQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTASDRRLLGDSLPMRSLRKHIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAHHPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKRGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGESQETVVDVRILCATHKDLDAEVFAERFRQDLYYRLNVIELPVPPLRERRDDIEPLASH
VLKRLAASSGQPAAKLHPLALEALKSYRFPGNVRELENVLERAYTLCENKQIEASDLRLAEGNCTAETGVPDLTQIDNLE
HYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKFGLD
Nucleotide
Download Length: 1341 bp
>NTDB_id=627363 LOY55_RS26160 WP_109786291.1 5714342..5715682(+) (pilR) [Pseudomonas sp. B21-040]
ATGAGCCCACGGCCAAAAGTCCTGATCGTCGACGACGAACCCGATATCCGCGAACTCCTCGAAATCACCCTCGGACGGAT
GAAACTCGATACCTTCAGTGCCCGTAACGTGGGCGATGCCCAAGCCTTGCTGGCCCGGGAAACATTCGACCTGTGCCTGA
CCGACATGCGCTTGCCTGACGGCACCGGCCTCGAACTGGTGCAGCATATCCAGCAGCGTTATCCGCAAGTGCCGGTGGCG
ATGATCACCGCCTACGGCAGTCTCGAAACTGCGATCAACGCGCTCAAGGCTGGCGCCTTCGACTTCCTGACGAAACCGGT
CGACCTCACTCGCCTGCGGGAACTGGTCACCAGTGCCCTGCGCCTGCCTGCACCGGGCGGAGCCAGTACGGCCAGTGATC
GTCGCCTGCTGGGTGACTCACTGCCTATGCGCAGTCTGCGCAAACACATCGACAAACTCGCCCGCAGCCAGGCACCGGTG
TACATCAGCGGCGAATCCGGCAGTGGCAAGGAGTTGGTCGCACGGCTGATTCACGAGCAAGGACCGCGAGCCCATCATCC
ATTTGTCCCGGTCAACTGCGGGGCGATTCCGTCAGAGCTGATGGAGAGCGAGTTCTTCGGCCATCGCAAAGGCAGTTTCA
GTGGCGCCATCGAAGACAAGCGAGGGTTGTTCCAGGCAGCCCATGGCGGAACGTTGTTTCTCGACGAAGTCGCGGATCTA
CCTTTGGCGATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAAGCGGTTCGCAGCATCGGCGAATCACAGGAAACGGT
GGTCGATGTGCGCATCCTTTGCGCCACCCACAAAGACCTTGATGCCGAAGTCTTTGCAGAACGTTTTCGTCAGGATTTGT
ATTACCGGCTCAACGTGATCGAGCTGCCGGTTCCGCCCTTGCGCGAACGCCGTGACGACATCGAACCACTGGCCAGCCAC
GTGCTCAAGCGCTTGGCAGCCAGCAGCGGCCAACCTGCCGCAAAGCTCCACCCTCTGGCCCTGGAGGCACTGAAAAGCTA
CCGATTCCCGGGTAACGTGCGGGAACTGGAGAACGTGCTCGAACGGGCTTACACCCTGTGTGAAAACAAGCAGATCGAAG
CCAGCGACCTGCGCCTGGCCGAAGGCAATTGCACGGCAGAGACCGGCGTGCCGGACCTGACGCAGATCGATAATCTTGAA
CACTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAGCCTGTCATTTCGGTCGATGCGTTACCGACTGAAGAAATTCGGACTGGATTGA
ATGAGCCCACGGCCAAAAGTCCTGATCGTCGACGACGAACCCGATATCCGCGAACTCCTCGAAATCACCCTCGGACGGAT
GAAACTCGATACCTTCAGTGCCCGTAACGTGGGCGATGCCCAAGCCTTGCTGGCCCGGGAAACATTCGACCTGTGCCTGA
CCGACATGCGCTTGCCTGACGGCACCGGCCTCGAACTGGTGCAGCATATCCAGCAGCGTTATCCGCAAGTGCCGGTGGCG
ATGATCACCGCCTACGGCAGTCTCGAAACTGCGATCAACGCGCTCAAGGCTGGCGCCTTCGACTTCCTGACGAAACCGGT
CGACCTCACTCGCCTGCGGGAACTGGTCACCAGTGCCCTGCGCCTGCCTGCACCGGGCGGAGCCAGTACGGCCAGTGATC
GTCGCCTGCTGGGTGACTCACTGCCTATGCGCAGTCTGCGCAAACACATCGACAAACTCGCCCGCAGCCAGGCACCGGTG
TACATCAGCGGCGAATCCGGCAGTGGCAAGGAGTTGGTCGCACGGCTGATTCACGAGCAAGGACCGCGAGCCCATCATCC
ATTTGTCCCGGTCAACTGCGGGGCGATTCCGTCAGAGCTGATGGAGAGCGAGTTCTTCGGCCATCGCAAAGGCAGTTTCA
GTGGCGCCATCGAAGACAAGCGAGGGTTGTTCCAGGCAGCCCATGGCGGAACGTTGTTTCTCGACGAAGTCGCGGATCTA
CCTTTGGCGATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAAGCGGTTCGCAGCATCGGCGAATCACAGGAAACGGT
GGTCGATGTGCGCATCCTTTGCGCCACCCACAAAGACCTTGATGCCGAAGTCTTTGCAGAACGTTTTCGTCAGGATTTGT
ATTACCGGCTCAACGTGATCGAGCTGCCGGTTCCGCCCTTGCGCGAACGCCGTGACGACATCGAACCACTGGCCAGCCAC
GTGCTCAAGCGCTTGGCAGCCAGCAGCGGCCAACCTGCCGCAAAGCTCCACCCTCTGGCCCTGGAGGCACTGAAAAGCTA
CCGATTCCCGGGTAACGTGCGGGAACTGGAGAACGTGCTCGAACGGGCTTACACCCTGTGTGAAAACAAGCAGATCGAAG
CCAGCGACCTGCGCCTGGCCGAAGGCAATTGCACGGCAGAGACCGGCGTGCCGGACCTGACGCAGATCGATAATCTTGAA
CACTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAGCCTGTCATTTCGGTCGATGCGTTACCGACTGAAGAAATTCGGACTGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
78.33 |
99.327 |
0.778 |
| pilR | Acinetobacter baumannii strain A118 |
48.812 |
100 |
0.507 |