Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY55_RS26155 Genome accession   NZ_CP087176
Coordinates   5712750..5714339 (+) Length   529 a.a.
NCBI ID   WP_223522747.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-040     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5707750..5719339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY55_RS26135 (LOY55_26095) pgeF 5709547..5710272 (-) 726 WP_223522732.1 peptidoglycan editing factor PgeF -
  LOY55_RS26140 (LOY55_26100) rluD 5710269..5711231 (-) 963 WP_046028527.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY55_RS26145 (LOY55_26105) - 5711383..5712405 (+) 1023 WP_046028529.1 outer membrane protein assembly factor BamD -
  LOY55_RS26150 (LOY55_26110) - 5712527..5712760 (+) 234 WP_046028530.1 PP0621 family protein -
  LOY55_RS26155 (LOY55_26115) pilS 5712750..5714339 (+) 1590 WP_223522747.1 PAS domain-containing sensor histidine kinase Regulator
  LOY55_RS26160 (LOY55_26120) pilR 5714342..5715682 (+) 1341 WP_109786291.1 sigma-54 dependent transcriptional regulator Regulator
  LOY55_RS26165 (LOY55_26125) thiO 5715704..5716804 (-) 1101 WP_223522731.1 glycine oxidase ThiO -
  LOY55_RS26170 (LOY55_26130) - 5716861..5717262 (-) 402 WP_223522730.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58503.19 Da        Isoelectric Point: 6.9389

>NTDB_id=627362 LOY55_RS26155 WP_223522747.1 5712750..5714339(+) (pilS) [Pseudomonas sp. B21-040]
MVAETSSPGGKQAQRLLRLYHLYRLSVGITLVLLTTSNLDNQLLTFARDDLLRNGSWLYLVLNILLVVFLENTQKPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNALLRGRTGLLIAAVGALGIVGLSFLLSFSHPTSPNDYLQVSTLG
ALCFAAAWLVQGLTRRLEVSEHLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSALTLLGHKALDGHRID
DFSPALVERLQLWLNNPTLRPQSLKNARSGLELQPSFIALDQSPNHQTLVFLEDLAQVAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNGVDRRLTQIIQDHSARMNRVIENVLQLSRRQQTVPQRLDLKPWLERFVTETREGAPLG
QHIHLRTGPGDFNTLMDPNQLTQILDNLLRNAWRHSALNHDEAQVWLELFVDVDSQLPILEVLDDGPGVAPDQQVHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627362 LOY55_RS26155 WP_223522747.1 5712750..5714339(+) (pilS) [Pseudomonas sp. B21-040]
GTGGTCGCTGAGACGTCCAGTCCCGGCGGCAAACAGGCTCAGCGGCTGCTGCGCCTTTATCACCTCTATCGCTTAAGCGT
CGGCATCACCTTGGTGTTGCTGACTACCAGCAACCTGGACAACCAGTTACTGACGTTCGCCAGAGACGACCTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAATATTCTGCTGGTGGTGTTTCTGGAAAACACCCAAAAACCAGCACAGCTCTTC
AGTCTGGCACTGGTCGACGTCTTGCTGCTCTGTGGTTTGTTCTACGCCGCAGGCGGCGTGGCCAGCGCCATCGGCAATCT
ATTGATCGTGTCGGTGGCCATCAGCAATGCCCTGCTGCGTGGACGTACCGGCCTGTTGATAGCCGCTGTCGGCGCACTGG
GGATCGTCGGCTTGAGTTTCCTCCTGAGCTTCAGCCACCCGACCAGCCCCAACGACTACCTGCAAGTCAGCACGCTCGGC
GCACTGTGCTTTGCCGCAGCATGGCTGGTACAAGGCTTGACCAGGCGACTGGAGGTCAGCGAACACCTCGCCGAACAGCG
AGCCAGCGAAGTGGTAGGCCTCGAAGCACTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTGGATG
AACAACGACGTGTGCAACTGGCCAATCACAGCGCCTTGACCTTGCTGGGGCATAAAGCACTCGATGGACATCGGATCGAC
GACTTTTCACCCGCACTGGTCGAACGTCTTCAGCTCTGGCTCAACAATCCGACGTTGCGCCCGCAAAGCCTGAAAAACGC
CCGCAGTGGCCTGGAACTGCAACCCAGTTTCATCGCTCTGGACCAGAGCCCAAACCATCAGACCCTGGTGTTTCTCGAGG
ACCTCGCTCAGGTCGCACAACAGGCACAGCAGTTGAAACTCGCCGCCCTCGGTCGACTGACGGCAGGTATTGCCCATGAA
ATCCGCAACCCACTGGGTGCCATCAGTCATGCCGCGCAATTGCTGCGCGAATCCGAGGAACTCAATGGCGTGGATCGGCG
TCTGACCCAGATTATTCAAGATCACTCAGCGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACAGTACCGCAACGGCTCGATCTGAAGCCGTGGCTGGAACGATTCGTCACCGAAACCCGTGAGGGTGCCCCTCTGGGT
CAGCACATTCACCTGCGTACCGGGCCAGGCGACTTCAACACCTTGATGGACCCGAACCAGCTCACCCAGATTCTGGACAA
TTTGTTGCGCAATGCCTGGCGCCATAGCGCCCTCAATCACGACGAAGCCCAGGTCTGGCTTGAGCTGTTTGTCGATGTCG
ACAGCCAGTTGCCCATACTGGAAGTGCTGGACGATGGGCCCGGCGTGGCACCGGACCAGCAGGTGCATTTGTTCGAACCG
TTCTTTACCACCAGTAGCCAAGGCACAGGCCTGGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCCAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.245

100

0.594