Detailed information NTG0627356

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY55_RS22700
• Genome accession: NZ_CP087176
• Coordinates: 4957899..4960133 (-)
• Length: 744 a.a.
• NCBI ID: WP_258666846.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-040
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4952899..4965133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY55_RS22665 (LOY55_22625)	murB	4953278..4954297 (-)	1020	WP_258666838.1	UDP-N-acetylmuramate dehydrogenase	-
LOY55_RS22670 (LOY55_22630)	-	4954294..4954758 (-)	465	WP_027924028.1	low molecular weight protein-tyrosine-phosphatase	-
LOY55_RS22675 (LOY55_22635)	kdsB	4954758..4955522 (-)	765	WP_077431507.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY55_RS22680 (LOY55_22640)	-	4955519..4955704 (-)	186	WP_007945752.1	Trm112 family protein	-
LOY55_RS22685 (LOY55_22645)	lpxK	4955730..4956740 (-)	1011	WP_258666844.1	tetraacyldisaccharide 4'-kinase	-
LOY55_RS22690 (LOY55_22650)	-	4956740..4957168 (-)	429	WP_077431504.1	biopolymer transporter ExbD	-
LOY55_RS22695 (LOY55_22655)	exbB	4957165..4957800 (-)	636	WP_046031667.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY55_RS22700 (LOY55_22660)	comA	4957899..4960133 (-)	2235	WP_258666846.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY55_RS22705 (LOY55_22665)	-	4960269..4960784 (+)	516	WP_046031666.1	DUF2062 domain-containing protein	-
LOY55_RS22710 (LOY55_22670)	-	4960857..4961636 (-)	780	WP_223522253.1	ABC transporter permease	-
LOY55_RS22715 (LOY55_22675)	-	4961633..4962565 (-)	933	WP_046031664.1	ABC transporter ATP-binding protein	-
LOY55_RS22720 (LOY55_22680)	-	4962697..4963320 (-)	624	WP_046031663.1	glutathione S-transferase family protein	-
LOY55_RS22725 (LOY55_22685)	-	4963364..4964023 (-)	660	WP_109785199.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81920.05 Da
• Isoelectric Point: 9.8880

>NTDB_id=627356 LOY55_RS22700 WP_258666846.1 4957899..4960133(-) (comA) [Pseudomonas sp. B21-040]
MRTGMIALALGLLALRFLPELPPVGLWGLLPLVGLMVLPFRSYPLAFFLFGFSWACANAQWALDDRLPHTLDGETRWVEG
RVTGLPQQADGVVRFELTDSQSRRTKLPRHLRLAWYGGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGELVAEARWAWRDGIRRRLQAVDAQGRTGALTALVLGDGAGLSREEWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLTRLGLWPGRLPWLPWACGLAFSAALAYGLLAGFDVPVQRACVMIGLVLLWRLRFRHLGAWWPLLLALNGVLLVDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISISGPVANLLAVPWISLLVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFRALALMAGQLPAWLPAAVPLWSWALGTLGAFLLLMPRGVALRPLGWPLLLMLV
FPPRPLLPEDRADVWQLDVGQGLAILVRTRYHTLLYDTGPRFGDFDLGERVVLPSLRKLGVKGLDLMLISHADADHAGGA
RAVANGLPVSRVLSGDPEGLPAELHAEGCESGRQWTWDGVHFELWQWTSAHDRNQKSCVLQIEASGERLLLTGDIDTAAE
RALLESPLAQNTDWLQSPHHGSRSSSSMALLSALQPKAVLISRGQGNSFGHPHPTVVARYKKLGMMIYDSAEHGAIHLQL
GRFKPPWTMRLDRRFWRDPPPLNK

Nucleotide

• Length: 2235 bp

>NTDB_id=627356 LOY55_RS22700 WP_258666846.1 4957899..4960133(-) (comA) [Pseudomonas sp. B21-040]
ATGCGCACAGGGATGATAGCGCTGGCGTTGGGTTTGCTGGCCCTGAGGTTTTTGCCGGAACTACCGCCGGTTGGGTTATG
GGGGTTGCTGCCGTTAGTCGGTTTGATGGTGTTGCCGTTTCGCTCGTATCCATTGGCGTTTTTCCTGTTCGGCTTCAGTT
GGGCGTGCGCGAACGCGCAGTGGGCGCTGGATGATCGGCTGCCACACACACTCGATGGCGAGACGCGCTGGGTCGAAGGG
CGGGTAACGGGCCTGCCGCAACAGGCAGACGGCGTGGTGCGTTTCGAGCTGACGGACAGCCAGTCACGCCGAACCAAACT
GCCCCGACACCTGCGTCTGGCCTGGTATGGCGGGCCGCCCGTCAATAGCGGCGAACGGTGGCGGCTGGCGGTCAAATTGA
AGCGTCCTGCCGGGCTGCTCAATCCGCATGCGTTCGATTATGACGCCTGGCTGCTGGCTCAACGCATCGGTGCAACCGGC
ACGGTCAAGGACGGCGAATTGGTCGCCGAAGCCCGATGGGCCTGGCGCGACGGCATCCGCCGGCGTTTGCAAGCCGTAGA
TGCCCAAGGCCGAACCGGGGCGTTGACGGCGCTGGTGCTGGGCGATGGCGCCGGGCTGAGCCGTGAGGAATGGCAAGTGC
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATTTCTGGGCAGCACATCGGCTTGCTGGCGGGATTGGTCTATCTGCTG
ATCGCAGGGTTGACGCGTTTGGGGCTGTGGCCAGGGCGTTTACCCTGGCTGCCATGGGCGTGCGGGCTGGCGTTCTCGGC
AGCGCTGGCTTATGGGTTACTGGCCGGTTTCGACGTACCGGTGCAACGCGCGTGCGTGATGATCGGGCTGGTGCTGTTAT
GGCGGCTGCGTTTTCGTCACCTCGGTGCGTGGTGGCCGCTGTTGCTGGCGTTGAATGGCGTTTTGCTGGTGGATCCGCTG
GCCAGTCTGCAACCAGGCTTCTGGCTATCTTTTGCAGCAGTGGCGGTGTTGATCTTCACCTTTGGCGGGCGGTTGGGCCC
CTGGCGATGGTGGCAAACCTGGACTCGGGCCCAGTGGCTGATTGCAATCGGTTTGTGCCCGTTGTTGTTGGTGCTGGGCT
TGCCGATCAGCATCAGCGGGCCTGTGGCCAATTTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTGTTGCCACCAGCCTTG
CTCGGCACATTGTTATTACCCGTCCCTTATGTGGGCGAAGGGTTGCTGTGGCTGGCGGGCGGGTTGATCGACTGGCTGTT
CAGGGCACTGGCATTAATGGCCGGGCAACTGCCTGCGTGGTTACCGGCGGCGGTACCGCTGTGGAGTTGGGCGCTCGGCA
CATTGGGGGCCTTTCTACTCTTGATGCCGCGAGGCGTTGCGCTACGCCCTTTGGGCTGGCCGCTGCTGTTGATGCTGGTG
TTTCCACCTCGACCGTTGTTGCCTGAAGACCGGGCCGATGTCTGGCAACTGGACGTCGGCCAAGGATTGGCCATCCTGGT
GCGTACTCGCTATCACACGCTGCTGTATGACACCGGGCCTCGTTTCGGCGATTTCGACCTCGGTGAGCGGGTGGTCCTGC
CTTCGTTGCGCAAACTGGGGGTGAAGGGGCTCGACCTGATGCTGATCAGCCACGCCGATGCCGATCACGCTGGTGGTGCG
CGAGCAGTGGCCAATGGTTTGCCGGTCAGTCGGGTACTCAGTGGCGATCCCGAGGGGCTGCCTGCCGAACTGCACGCCGA
GGGCTGTGAAAGTGGTCGGCAATGGACCTGGGACGGCGTGCACTTCGAACTGTGGCAATGGACGTCAGCCCATGACCGCA
ATCAGAAATCCTGCGTATTGCAAATAGAAGCCAGCGGCGAGCGACTGTTGCTGACCGGTGATATCGACACCGCTGCCGAG
CGGGCGTTGCTTGAAAGTCCTCTCGCACAAAACACCGATTGGTTGCAGTCACCTCATCATGGCAGCCGCAGTTCCTCGTC
GATGGCGCTGTTGAGCGCGCTGCAACCCAAGGCCGTGCTGATTTCCCGTGGGCAAGGCAATTCCTTTGGCCATCCGCACC
CCACCGTGGTGGCGCGCTATAAAAAGCTCGGCATGATGATCTACGACAGCGCCGAGCACGGCGCCATTCATCTGCAATTG
GGCCGTTTCAAACCGCCGTGGACGATGCGTCTGGATCGGCGTTTCTGGCGCGATCCGCCACCGCTCAACAAATAG

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.418	95.161	0.603
comA	Ralstonia pseudosolanacearum GMI1000	35.979	100	0.366