Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY55_RS22695 Genome accession   NZ_CP087176
Coordinates   4957165..4957800 (-) Length   211 a.a.
NCBI ID   WP_046031667.1    Uniprot ID   A0A2V2AMV2
Organism   Pseudomonas sp. B21-040     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4952165..4962800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY55_RS22660 (LOY55_22620) - 4952566..4953039 (-) 474 WP_046031673.1 (2Fe-2S)-binding protein -
  LOY55_RS22665 (LOY55_22625) murB 4953278..4954297 (-) 1020 WP_258666838.1 UDP-N-acetylmuramate dehydrogenase -
  LOY55_RS22670 (LOY55_22630) - 4954294..4954758 (-) 465 WP_027924028.1 low molecular weight protein-tyrosine-phosphatase -
  LOY55_RS22675 (LOY55_22635) kdsB 4954758..4955522 (-) 765 WP_077431507.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY55_RS22680 (LOY55_22640) - 4955519..4955704 (-) 186 WP_007945752.1 Trm112 family protein -
  LOY55_RS22685 (LOY55_22645) lpxK 4955730..4956740 (-) 1011 WP_258666844.1 tetraacyldisaccharide 4'-kinase -
  LOY55_RS22690 (LOY55_22650) - 4956740..4957168 (-) 429 WP_077431504.1 biopolymer transporter ExbD -
  LOY55_RS22695 (LOY55_22655) exbB 4957165..4957800 (-) 636 WP_046031667.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY55_RS22700 (LOY55_22660) comA 4957899..4960133 (-) 2235 WP_258666846.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY55_RS22705 (LOY55_22665) - 4960269..4960784 (+) 516 WP_046031666.1 DUF2062 domain-containing protein -
  LOY55_RS22710 (LOY55_22670) - 4960857..4961636 (-) 780 WP_223522253.1 ABC transporter permease -
  LOY55_RS22715 (LOY55_22675) - 4961633..4962565 (-) 933 WP_046031664.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22971.14 Da        Isoelectric Point: 6.8770

>NTDB_id=627355 LOY55_RS22695 WP_046031667.1 4957165..4957800(-) (exbB) [Pseudomonas sp. B21-040]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627355 LOY55_RS22695 WP_046031667.1 4957165..4957800(-) (exbB) [Pseudomonas sp. B21-040]
GTGTGGGAATTGGTCAAATCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCACCGTTGGGCGAGATCCTGGCGGCGGGCCTTGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCCGCGCGGGTCATTCACGAACTCGAACGCTACAT
CAATGCCTTGGGCACCATCGCCGCCATGGCCCCGTTACTCGGATTGCTGGGGACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCACGGGCATGACCACCAACGCCGCAGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACGGCT
TCGGGCCTGATCGTCGGCATCCCGTCGGTATTCTTTCACCGGTTCTTGCAACGGCGCATCGATGAACTGGTGGTGGGGAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTTGATCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V2AMV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839