Detailed information NTG0627335

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY43_RS24300
• Genome accession: NZ_CP087175
• Coordinates: 5464577..5465923 (+)
• Length: 448 a.a.
• NCBI ID: WP_220557010.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-041
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5459577..5470923

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY43_RS24275 (LOY43_24240)	pgeF	5459783..5460505 (-)	723	WP_095048691.1	peptidoglycan editing factor PgeF	-
LOY43_RS24280 (LOY43_24245)	rluD	5460502..5461464 (-)	963	WP_016986220.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY43_RS24285 (LOY43_24250)	-	5461616..5462632 (+)	1017	WP_258708833.1	outer membrane protein assembly factor BamD	-
LOY43_RS24290 (LOY43_24255)	-	5462759..5463001 (+)	243	WP_093434843.1	PP0621 family protein	-
LOY43_RS24295 (LOY43_24260)	pilS	5462991..5464580 (+)	1590	WP_095125453.1	PAS domain-containing sensor histidine kinase	Regulator
LOY43_RS24300 (LOY43_24265)	pilR	5464577..5465923 (+)	1347	WP_220557010.1	sigma-54 dependent transcriptional regulator	Regulator
LOY43_RS24305 (LOY43_24270)	thiO	5466039..5467139 (-)	1101	WP_095125454.1	glycine oxidase ThiO	-
LOY43_RS24310 (LOY43_24275)	-	5467197..5467598 (-)	402	WP_258708834.1	type IV pilin protein	-
LOY43_RS24315 (LOY43_24280)	-	5467614..5470703 (-)	3090	WP_258708835.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50033.34 Da
• Isoelectric Point: 6.4113

>NTDB_id=627335 LOY43_RS24300 WP_220557010.1 5464577..5465923(+) (pilR) [Pseudomonas sp. B21-041]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLNRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSFTSIDRRLLGDSPPMRILRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
ASMLKRLAKDTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=627335 LOY43_RS24300 WP_220557010.1 5464577..5465923(+) (pilR) [Pseudomonas sp. B21-041]
TTGAATACGAGCCCACGGCAAAAAATTCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAGCTCGACACCTACAGCGCACGCAATCTGGCTGAAGCCCAGGCGCTGCTGAACCGCGAGAGTTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACGGGGCTGGAGCTGGTGCAGCACATTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCTTATGGCAGCCTGGAAACGGCCATCAACGCTTTGAAAGCAGGTGCTTTCGACTTCCTGACCAA
ACCGGTCGACCTTACGCGCCTGCGCGAACTGGTCGGCACAGCCCTGCGCATGCCGGCGGCGGGAGGCAGCTTTACCTCCA
TTGATCGGCGCTTGCTCGGCGATTCGCCACCGATGCGCATTCTGCGCAAGCAAATCGACAAACTCGCTCGCAGCCAGGCG
CCGGTGTACATCAGTGGCGAGTCGGGCAGCGGCAAGGAACTGGTCGCGCGGCTGATCCATGAACAAGGGCCGCGCGCCGG
CCAGCCGTTCGTGCCGGTGAACTGTGGGGCAATTCCTTCCGAGCTGATGGAAAGCGAATTCTTCGGACATCGCAAAGGCA
GTTTCACCGGCGCGGTCGAGGACAAGCCCGGGTTGTTTCAGGCAGCCCATGGCGGTACGTTGTTTCTCGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAAGTCAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTCGACGCGGAGGTGGCGGCCGAACGCTTCCGTCAGG
ATCTGTATTACCGCTTGAACGTGATCGAACTGCGCGTGCCGTCCCTGCGCGAAAGGCGTGATGATATTGAAGTGCTGGCG
GCCAGTATGCTCAAGCGTTTGGCCAAGGACACCGGCCAGCCGGCAGCACGCTTGCATCCGCAGGCGTTGGAAGCGCTGAA
GAATTACCGGTTTCCGGGGAATGTGCGGGAGTTGGAGAACGTGCTTGAGCGCGCGCACACCTTATGTGAAAACCGCACGA
TCGAGGCTGAAGATTTACGTCTGAGCGAAGGCAACTGCGCGGCGGATGGCGGGATTGCCGATCTGACCCAGATCGATAAT
CTGGAAGATTATCTGGAGAACGTCGAGAGGAAGCTGATCTTGCAGGCGCTGGAAGAAACGCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTTCGTTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.135	98.884	0.792
pilR	Acinetobacter baumannii strain A118	48.584	100	0.498