Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY43_RS24295 Genome accession   NZ_CP087175
Coordinates   5462991..5464580 (+) Length   529 a.a.
NCBI ID   WP_095125453.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-041     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5457991..5469580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY43_RS24275 (LOY43_24240) pgeF 5459783..5460505 (-) 723 WP_095048691.1 peptidoglycan editing factor PgeF -
  LOY43_RS24280 (LOY43_24245) rluD 5460502..5461464 (-) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY43_RS24285 (LOY43_24250) - 5461616..5462632 (+) 1017 WP_258708833.1 outer membrane protein assembly factor BamD -
  LOY43_RS24290 (LOY43_24255) - 5462759..5463001 (+) 243 WP_093434843.1 PP0621 family protein -
  LOY43_RS24295 (LOY43_24260) pilS 5462991..5464580 (+) 1590 WP_095125453.1 PAS domain-containing sensor histidine kinase Regulator
  LOY43_RS24300 (LOY43_24265) pilR 5464577..5465923 (+) 1347 WP_220557010.1 sigma-54 dependent transcriptional regulator Regulator
  LOY43_RS24305 (LOY43_24270) thiO 5466039..5467139 (-) 1101 WP_095125454.1 glycine oxidase ThiO -
  LOY43_RS24310 (LOY43_24275) - 5467197..5467598 (-) 402 WP_258708834.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58540.09 Da        Isoelectric Point: 6.5576

>NTDB_id=627334 LOY43_RS24295 WP_095125453.1 5462991..5464580(+) (pilS) [Pseudomonas sp. B21-041]
MIAEATHADSKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLTSANDELLRAGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLGFNHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEARRVQLANHSAQTLLAQSHLQGHLID
DYSTALVDRLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPHQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVVESREQASER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLSLFSDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627334 LOY43_RS24295 WP_095125453.1 5462991..5464580(+) (pilS) [Pseudomonas sp. B21-041]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTCTACCGCTTGAGTAT
CGGCATCACGCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAATTGCTGCGCG
CTGGCAGTTGGCTGTATCTGATCCTCAACATTCTGTTGGTGGTGTTCCTTGAGAACACCCGACGGCCAGCGCAGCTGTTC
AGTCTGGCCCTCGTCGATGTCCTGCTTTTATGCGGTTTGTTCTTTGCTGCGGGCGGCGTCGGTAGTGCGCTGGGCAATTT
GCTGATTGTCTCGGTGGCGATCAGCAACACCCTGCTACGGCGGCGCATCGGGCTATTGATCGCCGCCATCGGTGCGCTGG
GCATCGTCGGCTCGAGCTTCCTGCTCGGCTTCAACCATCCCCTTAGCGCCAATGAATACTTGCAGGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCGTCGTTGCTGGTGCAGGGACTGATCCGCCGCCTCGAAGTCAGCGAAACCCTTGCCGAGCAACG
TGCCAGTGAAGTGGTCAGCCTCGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AGGCGCGGCGAGTGCAACTGGCCAATCACAGCGCGCAAACCCTGCTCGCGCAGTCGCACCTTCAGGGGCATTTGATCGAT
GACTATTCCACGGCGCTGGTCGATCGCCTGCAACTGTGGCTGAACAACCCGACCTTGCGCCCGCAGAGTCTGAAAATCCC
CGGCAACGGCCTGGAACTGCAACCGAGCTTCATTGCCCTCGAACAAAGCCCCCACCAGCAAACCCTGGTATTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAAGCCCAGCAACTTAAGCTCGCCGCACTCGGGCGCTTGACCGCCGGCATCGCCCACGAG
ATCCGCAATCCGTTGGGCGCCATCAGTCACGCCGCGCAGCTATTGGCTGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCTCGCCGCCAGC
AAAGCGCGCCGCAACGCCTGGATCTCAAGCCATGGCTGGAAAACTTCGTTGTCGAAAGTCGTGAACAGGCCAGCGAACGC
CAGCAGATTCACCTGCGGATCAATTCGGGAGATTTCACCACGCTGATGGACCCGAACCAGCTCACGCAAATTCTCGACAA
TCTGCTACGCAATGGCTGGCGCCACAGCGCCCTGCTGCATGATCAGGCCGAAGTCTGGCTCTCGTTGTTCAGTGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCTGCCGATGAACAGACACATCTGTTCGAACCC
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAGTCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601