Detailed information NTG0627333

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY43_RS24190
• Genome accession: NZ_CP087175
• Coordinates: 5447794..5448666 (+)
• Length: 290 a.a.
• NCBI ID: WP_095048682.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-041
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5442794..5453666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY43_RS24165 (LOY43_24130)	-	5442979..5443275 (+)	297	WP_258708831.1	DUF2845 domain-containing protein	-
LOY43_RS24170 (LOY43_24135)	-	5443563..5443919 (-)	357	WP_047600285.1	BON domain-containing protein	-
LOY43_RS24175 (LOY43_24140)	-	5444214..5444645 (-)	432	WP_095048680.1	pilin	-
LOY43_RS24180 (LOY43_24145)	pilB	5444872..5446572 (+)	1701	WP_095048681.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LOY43_RS24185 (LOY43_24150)	pilC	5446575..5447792 (+)	1218	WP_093434875.1	type II secretion system F family protein	Machinery gene
LOY43_RS24190 (LOY43_24155)	pilD	5447794..5448666 (+)	873	WP_095048682.1	A24 family peptidase	Machinery gene
LOY43_RS24195 (LOY43_24160)	coaE	5448663..5449286 (+)	624	WP_258708832.1	dephospho-CoA kinase	-
LOY43_RS24200 (LOY43_24165)	yacG	5449283..5449483 (+)	201	WP_095048684.1	DNA gyrase inhibitor YacG	-
LOY43_RS24205 (LOY43_24170)	-	5449490..5449705 (-)	216	WP_007909901.1	hypothetical protein	-
LOY43_RS24210 (LOY43_24175)	-	5449771..5450460 (-)	690	WP_095048686.1	energy-coupling factor ABC transporter permease	-
LOY43_RS24215 (LOY43_24180)	-	5450457..5450924 (-)	468	WP_095048687.1	FAD/FMN-containing dehydrogenase	-
LOY43_RS24220 (LOY43_24185)	-	5451055..5451681 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
LOY43_RS24225 (LOY43_24190)	-	5451678..5452205 (+)	528	WP_095048688.1	MOSC domain-containing protein	-
LOY43_RS24230 (LOY43_24195)	-	5452257..5452430 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32207.47 Da
• Isoelectric Point: 7.7032

>NTDB_id=627333 LOY43_RS24190 WP_095048682.1 5447794..5448666(+) (pilD) [Pseudomonas sp. B21-041]
MPIDELFAVYPLAFVGTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGEASQPVYNLMLPHSECPHCAHRIR
PWENIPLLSYLWLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVTLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITAFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=627333 LOY43_RS24190 WP_095048682.1 5447794..5448666(+) (pilD) [Pseudomonas sp. B21-041]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTAGCGTTTGTCGGCACCGCCCTGCTGCTGGGCCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATATGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCCAGCAGGCACACGATGTGCTCGGTT
TGCCCGGCGAAGCCTCGCAACCCGTCTACAACCTGATGCTGCCGCACTCCGAATGCCCCCATTGCGCCCACCGTATTCGC
CCGTGGGAAAACATTCCCCTGCTCAGTTATCTGTGGCTGCGTGGGCGCTGCTCAGCGTGCTCCGCACCGATCAGCAAACG
TTATCCGTTGACCGAGCTGGCCTGTGGGCTGCTCTCGGCCTTCATCGCCTGGCACTTGGGTTTCGGTTGGCCGGCGTGCT
TGCTGATCGTCCTCACCTGGGGTCTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTATTGCCTGATGTGCTGGTG
TTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTGACCTTGCACGATGCGTTGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAACTGCTGACTGGCAAGGACGGCATCGGTCATGGTGATT
TCAAGCTGTTGGCGCTGCTGGGGGCATGGGGCGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGATTTTGTTGCGCCTGCGAGAGCAAAAAACCTCGACGCCAATCCCCTTCGGCCCTTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGCCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.793	100	0.538
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Acinetobacter baumannii D1279779	49.442	92.759	0.459
pilD	Acinetobacter nosocomialis M2	49.442	92.759	0.459
pilD	Neisseria gonorrhoeae MS11	47.407	93.103	0.441