Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY30_RS19240 Genome accession   NZ_CP087173
Coordinates   4103105..4105327 (-) Length   740 a.a.
NCBI ID   WP_258701959.1    Uniprot ID   -
Organism   Pseudomonas donghuensis strain B21-043     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4098105..4110327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY30_RS19205 (LOY30_19150) murB 4098497..4099516 (-) 1020 WP_010223214.1 UDP-N-acetylmuramate dehydrogenase -
  LOY30_RS19210 (LOY30_19155) - 4099513..4099977 (-) 465 WP_010223213.1 low molecular weight protein-tyrosine-phosphatase -
  LOY30_RS19215 (LOY30_19160) kdsB 4099977..4100741 (-) 765 WP_036996492.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY30_RS19220 (LOY30_19165) - 4100738..4100923 (-) 186 WP_003247142.1 Trm112 family protein -
  LOY30_RS19225 (LOY30_19170) lpxK 4100961..4101971 (-) 1011 WP_258701958.1 tetraacyldisaccharide 4'-kinase -
  LOY30_RS19230 (LOY30_19175) - 4101971..4102402 (-) 432 WP_010223210.1 biopolymer transporter ExbD -
  LOY30_RS19235 (LOY30_19180) exbB 4102399..4103034 (-) 636 WP_010223209.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY30_RS19240 (LOY30_19185) comA 4103105..4105327 (-) 2223 WP_258701959.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY30_RS19245 (LOY30_19190) - 4105471..4106013 (+) 543 WP_258701960.1 DUF2062 domain-containing protein -
  LOY30_RS19250 (LOY30_19195) - 4105981..4106760 (-) 780 WP_010223206.1 ABC transporter permease -
  LOY30_RS19255 (LOY30_19200) - 4106757..4107689 (-) 933 WP_010223205.1 ABC transporter ATP-binding protein -
  LOY30_RS19260 (LOY30_19205) - 4107844..4108467 (-) 624 WP_159388995.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80203.88 Da        Isoelectric Point: 9.9024

>NTDB_id=627285 LOY30_RS19240 WP_258701959.1 4103105..4105327(-) (comA) [Pseudomonas donghuensis strain B21-043]
MRTGMLALALGLISLGFLPALPSVWGLVLLTVVGLSCLPSRLWPIGLFLLGLSWACISAQSALDQRLAAELDGRTLWIEG
RVTGLPEQGARSVRFELSAAHSRRAQLPRRIQLSWFGGPAVNSGERWRLAVSLKRPSGLLNPHGPDQEASLLARRIGATG
SVKAGERLAPATAAWRDHLRQRLLAVDAQGREAALAALVLGDGGGLAREDWQALQATGTVHLLVISGQHVGLLAGLVYAL
IAGLARLGWWPPRLPWLPCACALALAAALVYGVLAGFQVPVQRACVMLAMVLLWRLRFRHLGVGLPLLLALNAVLLWEPL
ASLQPGFWLSFVAVAILIFTFSGRLGAWNPWLAWGRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPAAL
LGTLLLPVPYLGEGLLWLAGGLLDGLFRMLAEAAVWRPAWLPAALPFWSWLLVCLGAFLLLLPRGLPMRALGWPLLLLAA
FAPRERVPEGQVEVWQLDVGQGLAFILRTRHHAMLYDAGPAMGDFDLGERVVLPSLHKLGVRQLDLMLLSHADADHAGGA
RAVQRGLPVLRVLSGEASALPAVLQAQSCGSGEGWQWDGVNFSLWQWHDAGDSNQDSCVLLVEAQGEKLLLTGDLDARGE
RAWVRDWQAGQVDWLQSPHHGSRSSSSEALLSATAPRGVLISRGRYNAFGHPHPEVMARYRTHGIQAYDNVEHGALRLRL
GAFGEPEGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=627285 LOY30_RS19240 WP_258701959.1 4103105..4105327(-) (comA) [Pseudomonas donghuensis strain B21-043]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGATCAGCCTCGGGTTTCTACCGGCTTTGCCGTCTGTCTGGGGACT
TGTCCTGCTGACAGTTGTCGGACTTTCCTGCTTGCCTTCGCGGCTCTGGCCAATCGGGTTGTTTCTGTTGGGGTTGAGCT
GGGCCTGTATCTCGGCGCAATCGGCGCTGGACCAGCGTCTGGCGGCAGAACTCGATGGCCGTACCTTGTGGATTGAAGGC
CGGGTCACAGGCTTGCCGGAGCAGGGCGCGCGCTCGGTGCGCTTCGAGCTGAGCGCTGCCCACTCTCGCCGTGCGCAATT
GCCCCGGCGAATACAGCTCAGCTGGTTTGGCGGGCCAGCGGTCAACAGCGGTGAGCGTTGGCGATTGGCCGTCAGCCTCA
AACGCCCCTCCGGTTTGCTCAATCCTCATGGTCCCGATCAGGAAGCGAGCCTGTTGGCCCGGCGTATCGGTGCCACCGGC
AGCGTCAAGGCCGGCGAGCGCCTGGCACCGGCGACAGCGGCCTGGCGCGATCACCTGCGCCAGCGCTTGTTGGCTGTGGA
TGCCCAAGGCCGAGAGGCGGCGCTGGCCGCGCTGGTACTGGGTGATGGCGGCGGGTTGGCGCGCGAAGACTGGCAGGCGT
TGCAGGCAACCGGTACGGTGCACTTGCTGGTGATCTCTGGCCAGCATGTGGGGCTGCTGGCCGGGTTGGTGTATGCCTTG
ATTGCCGGGCTGGCGCGCCTTGGCTGGTGGCCGCCAAGGTTGCCCTGGTTGCCTTGTGCCTGTGCGCTGGCACTTGCCGC
CGCACTGGTCTACGGCGTGTTGGCCGGTTTTCAGGTGCCGGTGCAGCGTGCCTGTGTGATGCTGGCCATGGTGCTGCTCT
GGCGCCTGCGTTTTCGCCATCTGGGCGTTGGCTTGCCGCTGTTGCTGGCGCTGAACGCGGTGTTGCTGTGGGAGCCGCTG
GCCAGTTTGCAGCCGGGCTTCTGGTTATCGTTCGTGGCCGTGGCGATTCTGATCTTTACCTTCAGCGGCCGCCTTGGCGC
CTGGAACCCGTGGCTGGCCTGGGGTCGCGCCCAGTGGTTGATCGCCATCGGCTTGTTGCCGGTGTTGCTCGCGCAAGGTT
TGCCGGTGAGCTTGACGGCACCGCTGATCAACCTGCTGGCGGTGCCGTGGATCAGCCTTGCGGTGTTGCCGGCGGCGTTG
CTCGGCACCCTGTTGCTGCCGGTGCCGTATCTGGGGGAGGGGCTGTTGTGGCTGGCCGGTGGCTTGCTCGACGGTTTGTT
CCGGATGTTGGCAGAAGCCGCTGTCTGGCGCCCGGCCTGGCTGCCTGCGGCACTGCCTTTCTGGAGCTGGTTGCTGGTGT
GCCTGGGGGCGTTCCTGCTGCTGTTGCCGCGCGGCTTGCCGATGCGCGCCCTCGGCTGGCCTTTGTTGCTGCTGGCGGCA
TTTGCGCCACGGGAGCGCGTACCCGAGGGCCAGGTGGAGGTCTGGCAACTGGATGTCGGCCAGGGGCTGGCGTTCATCTT
GCGCACCCGTCACCACGCCATGCTCTATGACGCGGGCCCGGCCATGGGCGATTTCGATTTGGGCGAGCGGGTGGTGCTAC
CCAGCTTGCACAAGCTGGGCGTGCGCCAGCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGACCACGCCGGCGGCGCT
CGCGCCGTTCAGCGCGGTTTGCCGGTACTACGGGTGCTCAGTGGCGAAGCGTCGGCCTTGCCTGCTGTGCTACAAGCGCA
ATCTTGCGGTAGCGGCGAGGGTTGGCAGTGGGACGGGGTCAATTTTTCCCTCTGGCAATGGCATGACGCCGGTGATAGCA
ACCAGGATTCCTGTGTGTTGCTGGTCGAGGCGCAAGGCGAGAAGCTGCTGCTCACCGGTGATCTCGATGCCCGTGGCGAG
CGGGCCTGGGTGCGGGATTGGCAGGCGGGCCAGGTCGATTGGCTGCAGTCGCCCCATCACGGCAGCCGCAGTTCCTCCAG
TGAGGCGCTGTTGAGCGCAACCGCCCCGCGTGGCGTGCTGATCTCCCGGGGGCGCTACAACGCCTTCGGTCATCCTCACC
CCGAGGTCATGGCGCGCTATCGGACGCACGGTATCCAGGCTTACGACAATGTCGAACACGGTGCGCTGCGCCTGCGCCTG
GGGGCGTTCGGCGAGCCTGAAGGGCTGCGCGCCCAGCGGCGTTTCTGGCGTGAGCCGAGATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(24-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.587

97.162

0.608
  comA Ralstonia pseudosolanacearum GMI1000

33.333

100

0.384