Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY30_RS19235 Genome accession   NZ_CP087173
Coordinates   4102399..4103034 (-) Length   211 a.a.
NCBI ID   WP_010223209.1    Uniprot ID   A0AAP0SGS2
Organism   Pseudomonas donghuensis strain B21-043     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4097399..4108034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY30_RS19205 (LOY30_19150) murB 4098497..4099516 (-) 1020 WP_010223214.1 UDP-N-acetylmuramate dehydrogenase -
  LOY30_RS19210 (LOY30_19155) - 4099513..4099977 (-) 465 WP_010223213.1 low molecular weight protein-tyrosine-phosphatase -
  LOY30_RS19215 (LOY30_19160) kdsB 4099977..4100741 (-) 765 WP_036996492.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY30_RS19220 (LOY30_19165) - 4100738..4100923 (-) 186 WP_003247142.1 Trm112 family protein -
  LOY30_RS19225 (LOY30_19170) lpxK 4100961..4101971 (-) 1011 WP_258701958.1 tetraacyldisaccharide 4'-kinase -
  LOY30_RS19230 (LOY30_19175) - 4101971..4102402 (-) 432 WP_010223210.1 biopolymer transporter ExbD -
  LOY30_RS19235 (LOY30_19180) exbB 4102399..4103034 (-) 636 WP_010223209.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY30_RS19240 (LOY30_19185) comA 4103105..4105327 (-) 2223 WP_258701959.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY30_RS19245 (LOY30_19190) - 4105471..4106013 (+) 543 WP_258701960.1 DUF2062 domain-containing protein -
  LOY30_RS19250 (LOY30_19195) - 4105981..4106760 (-) 780 WP_010223206.1 ABC transporter permease -
  LOY30_RS19255 (LOY30_19200) - 4106757..4107689 (-) 933 WP_010223205.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22830.04 Da        Isoelectric Point: 6.8759

>NTDB_id=627284 LOY30_RS19235 WP_010223209.1 4102399..4103034(-) (exbB) [Pseudomonas donghuensis strain B21-043]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAGRVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627284 LOY30_RS19235 WP_010223209.1 4102399..4103034(-) (exbB) [Pseudomonas donghuensis strain B21-043]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGGGTCACGCCACCGCATCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAACTCAAGGCCCTGCGTGCCGATTCGCCACTGGGCGAGATCCTCGCTGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCCGGCCGGGTCATTCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCCTTCATGGGCACCGGCATGACCACCAACGCGGCGGTGTTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853