Detailed information NTG0627260

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY44_RS18035
• Genome accession: NZ_CP087172
• Coordinates: 4023251..4025461 (-)
• Length: 736 a.a.
• NCBI ID: WP_258701046.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-044
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4018251..4030461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY44_RS18000 (LOY44_17975)	murB	4018590..4019609 (-)	1020	WP_258701043.1	UDP-N-acetylmuramate dehydrogenase	-
LOY44_RS18005 (LOY44_17980)	-	4019606..4020070 (-)	465	WP_111532688.1	low molecular weight protein-tyrosine-phosphatase	-
LOY44_RS18010 (LOY44_17985)	kdsB	4020070..4020834 (-)	765	WP_258701044.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY44_RS18015 (LOY44_17990)	-	4020831..4021016 (-)	186	WP_003247142.1	Trm112 family protein	-
LOY44_RS18020 (LOY44_17995)	lpxK	4021050..4022060 (-)	1011	WP_258701045.1	tetraacyldisaccharide 4'-kinase	-
LOY44_RS18025 (LOY44_18000)	-	4022060..4022494 (-)	435	WP_023632003.1	biopolymer transporter ExbD	-
LOY44_RS18030 (LOY44_18005)	exbB	4022491..4023126 (-)	636	WP_110703965.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY44_RS18035 (LOY44_18010)	comA	4023251..4025461 (-)	2211	WP_258701046.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY44_RS18040 (LOY44_18015)	-	4025606..4026262 (+)	657	WP_139672650.1	DUF2062 domain-containing protein	-
LOY44_RS18045 (LOY44_18020)	-	4026146..4026925 (-)	780	WP_023631459.1	ABC transporter permease	-
LOY44_RS18050 (LOY44_18025)	-	4026922..4027854 (-)	933	WP_110703895.1	ABC transporter ATP-binding protein	-
LOY44_RS18055 (LOY44_18030)	-	4027988..4028611 (-)	624	WP_139672653.1	glutathione S-transferase	-
LOY44_RS18060 (LOY44_18035)	-	4029136..4029375 (+)	240	WP_139672656.1	hypothetical protein	-
LOY44_RS18065 (LOY44_18040)	-	4029372..4029611 (+)	240	WP_139672658.1	DUF3077 domain-containing protein	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79534.22 Da
• Isoelectric Point: 11.2808

>NTDB_id=627260 LOY44_RS18035 WP_258701046.1 4023251..4025461(-) (comA) [Pseudomonas sp. B21-044]
MRTGMLALVLGLLSLRLLPALPPVGWLIPLLLLALACLRTRAWPLGWFVLGGCWACWSAQQALDDRLAPALDGRTLWLEG
QVVGLPTRTERGVRFELEHPESRRAQLPRRLQLSWFAGPELRAGERWRLAVNLRQPHGLLNPHGPDREALLLARGIGATG
SVKAGERVGQATVGWRDAVRQRLMNVDARGREAALAALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGAWPSRWPWLPWACGLAMAAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAALPLLLALSGVLLINPL
ASLLPGFWLSFAAVGVLMLCFSARLGAWRPWQAWSRAQWVIAVGLLPVLLALGLPVSLTAPLANLLAVPWISFAVLPLAL
LGTAALPLPGVGEGLLWLAGLSLDGLFHLLAQLAGQWPAWLPEPLPPWAWLLVALGALLLLLPRGVPLRLPGAVMLVALW
APREQVPHGQVQVWQLDVGQGLAVLLRTRHHALLYDAGPAHGDSDLGESVVLPTLRRLGVRHLDLMLVSHGHADHAGGAS
AVRRGLPVTRVLAGEVAGLAPAALCDSGERWRWDGVDFELWHWPQGASSNDRSCVLRVVANGERLLLAGDMEAGAERAWL
AASEDPRVDWLQAPHHGSRTSSTEPFIKALAPRGVMISRGRSNGFGHPHAQVIERYRRHGISIHDTALAGALSLRLGSQG
AAVGVRAERRFWRERE

Nucleotide

• Length: 2211 bp

>NTDB_id=627260 LOY44_RS18035 WP_258701046.1 4023251..4025461(-) (comA) [Pseudomonas sp. B21-044]
ATGCGCACAGGGATGCTGGCGCTGGTGCTCGGGCTGTTGAGCCTGCGTTTGTTACCTGCCTTGCCACCGGTCGGATGGCT
GATTCCATTGCTGTTGCTGGCCTTGGCCTGTCTGCGCACGCGGGCCTGGCCGCTGGGCTGGTTTGTGCTGGGTGGCTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCGCTGGATGATCGCCTGGCCCCAGCGCTGGATGGCCGCACGCTGTGGCTGGAGGGG
CAGGTGGTGGGGCTGCCGACCCGCACGGAGCGCGGCGTGCGTTTCGAGCTGGAGCATCCTGAGTCGCGCCGGGCGCAATT
GCCCAGGCGCCTGCAACTGAGCTGGTTCGCCGGGCCCGAATTGCGCGCCGGTGAGCGCTGGCGCCTGGCGGTGAACCTGC
GCCAGCCCCACGGGCTGCTCAACCCCCATGGCCCGGATCGCGAAGCGCTGTTGCTGGCCCGGGGTATCGGTGCCACAGGC
TCGGTCAAGGCCGGCGAGCGGGTCGGCCAGGCCACGGTGGGCTGGCGCGATGCCGTGCGCCAGCGGTTGATGAACGTGGA
TGCCCGTGGGCGCGAGGCGGCGCTGGCGGCCCTGGTGCTGGGCGATGGCGCCGGGCTGGCGCGCGAAGACTGGCAGACCC
TGCAGGCCACCGGCACGGTGCACCTGTTGGTGATCTCCGGCCAGCATATCGGGCTGTTGGCCGGGCTGGTGTATGGCCTG
GTCGCGGGCCTGGCGCGGCTGGGCGCCTGGCCATCGCGCTGGCCGTGGCTGCCCTGGGCCTGTGGCCTGGCCATGGCCGC
GGCATTGGGCTACGGCTGGCTGGCCGGGTTTGGCGTGCCGGTGCAGCGGGCCTGCCTGATGCTGGCGGTGGTGTTGCTCT
GGCGCCTGCGCTTCAGGCACCTGGGGGCAGCCTTGCCGCTGCTGTTGGCGTTGTCGGGGGTGTTGCTGATCAATCCATTG
GCCAGCCTGCTGCCGGGTTTCTGGCTGTCGTTTGCCGCGGTTGGCGTGCTGATGCTGTGCTTCTCTGCCCGGCTCGGCGC
CTGGCGGCCCTGGCAGGCCTGGAGCCGAGCCCAGTGGGTGATCGCCGTGGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGGTCAGCCTGACGGCGCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGTTTCGCGGTGTTGCCGCTGGCCCTG
CTTGGCACGGCGGCGTTGCCGCTGCCAGGGGTAGGGGAGGGGCTGTTGTGGCTGGCGGGGCTTTCGCTGGATGGGCTGTT
TCACCTGCTCGCGCAGCTTGCGGGGCAGTGGCCGGCATGGCTGCCCGAACCGTTGCCGCCGTGGGCCTGGCTGTTGGTCG
CGCTGGGCGCGCTGTTGTTGCTGCTGCCTCGGGGCGTGCCGTTGCGCTTGCCGGGCGCGGTGATGCTGGTGGCCTTGTGG
GCGCCGCGCGAGCAGGTGCCCCACGGGCAGGTGCAGGTGTGGCAGCTGGATGTCGGCCAGGGCCTGGCGGTACTGCTGCG
TACCCGTCATCACGCGCTGTTGTACGACGCCGGGCCTGCCCACGGCGACAGTGACCTGGGCGAGAGCGTGGTGCTGCCAA
CCTTGCGCAGGCTGGGGGTGAGGCACCTGGACCTGATGCTGGTCAGCCATGGCCACGCCGATCATGCCGGCGGGGCGTCG
GCAGTGCGTCGGGGGCTGCCGGTGACGCGGGTGCTGGCGGGGGAGGTTGCCGGGCTTGCGCCTGCCGCGCTGTGCGACAG
TGGTGAGCGCTGGCGCTGGGATGGGGTCGATTTCGAGCTGTGGCATTGGCCGCAGGGTGCCTCCAGCAATGACCGCTCCT
GCGTGCTGCGGGTGGTGGCCAATGGCGAGCGCCTGCTGCTGGCCGGCGACATGGAGGCCGGGGCGGAGCGGGCTTGGCTG
GCGGCCAGCGAGGATCCGCGTGTCGACTGGCTGCAGGCGCCGCACCACGGCAGCCGCACGTCGTCCACCGAACCGTTCAT
CAAGGCGCTGGCGCCACGCGGGGTGATGATTTCGCGGGGGCGCAGCAACGGCTTCGGGCATCCGCACGCGCAGGTGATCG
AGCGCTATCGGCGGCATGGGATCAGCATTCATGACACGGCGCTGGCGGGAGCACTGAGTTTGCGCCTGGGAAGTCAGGGT
GCAGCGGTAGGGGTGCGCGCAGAGCGCAGGTTCTGGCGAGAGCGCGAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-675)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.223	97.962	0.58
comA	Ralstonia pseudosolanacearum GMI1000	36.407	100	0.418