Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY44_RS18030 Genome accession   NZ_CP087172
Coordinates   4022491..4023126 (-) Length   211 a.a.
NCBI ID   WP_110703965.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-044     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4017491..4028126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY44_RS18000 (LOY44_17975) murB 4018590..4019609 (-) 1020 WP_258701043.1 UDP-N-acetylmuramate dehydrogenase -
  LOY44_RS18005 (LOY44_17980) - 4019606..4020070 (-) 465 WP_111532688.1 low molecular weight protein-tyrosine-phosphatase -
  LOY44_RS18010 (LOY44_17985) kdsB 4020070..4020834 (-) 765 WP_258701044.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY44_RS18015 (LOY44_17990) - 4020831..4021016 (-) 186 WP_003247142.1 Trm112 family protein -
  LOY44_RS18020 (LOY44_17995) lpxK 4021050..4022060 (-) 1011 WP_258701045.1 tetraacyldisaccharide 4'-kinase -
  LOY44_RS18025 (LOY44_18000) - 4022060..4022494 (-) 435 WP_023632003.1 biopolymer transporter ExbD -
  LOY44_RS18030 (LOY44_18005) exbB 4022491..4023126 (-) 636 WP_110703965.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY44_RS18035 (LOY44_18010) comA 4023251..4025461 (-) 2211 WP_258701046.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY44_RS18040 (LOY44_18015) - 4025606..4026262 (+) 657 WP_139672650.1 DUF2062 domain-containing protein -
  LOY44_RS18045 (LOY44_18020) - 4026146..4026925 (-) 780 WP_023631459.1 ABC transporter permease -
  LOY44_RS18050 (LOY44_18025) - 4026922..4027854 (-) 933 WP_110703895.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22803.06 Da        Isoelectric Point: 7.3616

>NTDB_id=627259 LOY44_RS18030 WP_110703965.1 4022491..4023126(-) (exbB) [Pseudomonas sp. B21-044]
MWELVKSGGWMMLPIILSSIAAMAIVGERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627259 LOY44_RS18030 WP_110703965.1 4022491..4023126(-) (exbB) [Pseudomonas sp. B21-044]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCTGCCATGGCAATCGTCGG
CGAGCGCCTGTGGACCTTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAATGCCGCCGTGCTGGCTGGGGGTATTTCCAAGGCCCTGGTCACTACCGCG
GCCGGCCTGATGGTCGGCATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTCGAGGTGTTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825