Detailed information NTG0627231

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY27_RS19305
• Genome accession: NZ_CP087171
• Coordinates: 4320447..4322681 (-)
• Length: 744 a.a.
• NCBI ID: WP_258710383.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain B21-045
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4315447..4327681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY27_RS19270 (LOY27_19235)	murB	4315825..4316844 (-)	1020	WP_258710382.1	UDP-N-acetylmuramate dehydrogenase	-
LOY27_RS19275 (LOY27_19240)	-	4316841..4317305 (-)	465	WP_073472251.1	low molecular weight protein-tyrosine-phosphatase	-
LOY27_RS19280 (LOY27_19245)	kdsB	4317305..4318069 (-)	765	WP_071173223.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY27_RS19285 (LOY27_19250)	-	4318066..4318251 (-)	186	WP_003179363.1	Trm112 family protein	-
LOY27_RS19290 (LOY27_19255)	lpxK	4318275..4319285 (-)	1011	WP_122880418.1	tetraacyldisaccharide 4'-kinase	-
LOY27_RS19295 (LOY27_19260)	-	4319285..4319713 (-)	429	WP_016771006.1	biopolymer transporter ExbD	-
LOY27_RS19300 (LOY27_19265)	exbB	4319710..4320345 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY27_RS19305 (LOY27_19270)	comA	4320447..4322681 (-)	2235	WP_258710383.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY27_RS19310 (LOY27_19275)	-	4322818..4323336 (+)	519	WP_016770668.1	DUF2062 domain-containing protein	-
LOY27_RS19315 (LOY27_19280)	-	4323488..4324267 (-)	780	WP_056788203.1	ABC transporter permease	-
LOY27_RS19320 (LOY27_19285)	-	4324264..4325196 (-)	933	WP_095181611.1	ABC transporter ATP-binding protein	-
LOY27_RS19325 (LOY27_19290)	-	4325330..4325953 (-)	624	WP_258710384.1	glutathione S-transferase family protein	-
LOY27_RS19330 (LOY27_19295)	-	4325997..4326656 (-)	660	WP_258710385.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81631.59 Da
• Isoelectric Point: 9.8498

>NTDB_id=627231 LOY27_RS19305 WP_258710383.1 4320447..4322681(-) (comA) [Pseudomonas atacamensis strain B21-045]
MRTGMMALAVGLLAPVFLPALPPVGLLVLLPVAALMLLPFRSYPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNGGERWRLAVKLKRPGGLLNPDAFDYKAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAADAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVVYLL
VAGLARFGIWPVRWPWLPWACGLAFGAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPFWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LTPQERIEEGRADVWQFDVGQGLAILVRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMRGFNVHRVVSGDPPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=627231 LOY27_RS19305 WP_258710383.1 4320447..4322681(-) (comA) [Pseudomonas atacamensis strain B21-045]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTTATT
GGTGCTGCTGCCGGTGGCGGCGTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCATTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTGGACGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGTCTGCCACAACACAGTGATGGCGTGGTGCGTTTCGAACTGGCTGATGCGCGTTCGCGCCACGAAAAGTT
GCCATCGCTGCTACGCCTGGCCTGGTACGCCGGGCCGCCGGTCAATGGTGGTGAGCGTTGGCGTCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCCTGCTCAACCCGGATGCCTTCGATTACAAGGCCTGGCTGCTGGCGCAACGGATCGGTGCGACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGCCGA
TGCGCAAGGACGAGAGGGCGCGCTGGCGGCGCTGGTGCTTGGTGACGGTTCAGGCCTCAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGCCAGCACATCGGTTTGCTGGCGGCGGTGGTGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCATGGTTGCCGTGGGCGTGTGGCCTGGCCTTCGGGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGTTTCGATGTGCCAGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGCCTGCGTTTTCGTCATCTCGGCGCATGGTGGCCGTTATTGCTGGCATTCAATGGCGTGCTGTTGTTCGATCCGCTG
GCCAGTTTGCGTCCGGGTTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACCTTCGGCGGGCGGCTGGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATAGGCTTGTGCCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCGGTACCGTGGGTCAGCCTCGTGGTGTTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTCCATTTTGGGCGTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCGATGCGTCCATTGGGCTGGCCGCTGCTGTTGCTCTTGGCA
CTGACGCCTCAAGAGCGAATAGAAGAAGGGCGGGCCGATGTCTGGCAATTCGACGTCGGCCAAGGCTTGGCCATCCTTGT
TCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGAGTGGTGTTGC
CAGCGTTACGCAAACTCAACGTGCAAGCGCTCGACTTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGCTTCAACGTGCACCGAGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTTTGGCAATGGTCGGCGGCCGATGACAGTA
ACCAGCGCTCCTGTGTCTTGCAGATCGAAGCCAACGGCGAACGCCTGCTGCTCACCGGCGATATCGACACTCATGCCGAG
CGCGTTCTGCTCGACAGCCCGCTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGCCGCAGTTCATCATC
GATGGCCCTGCTCAAAGCCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CGACCGTGCTGGCGCGCTATCGCAAACAGGGCCTGCGCATCTACGACAGCGCCGAACAAGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCGCCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.448	96.64	0.603
comA	Ralstonia pseudosolanacearum GMI1000	35.604	100	0.372