Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY27_RS19300 Genome accession   NZ_CP087171
Coordinates   4319710..4320345 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas atacamensis strain B21-045     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4314710..4325345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY27_RS19265 (LOY27_19230) - 4315055..4315525 (-) 471 WP_258710381.1 (2Fe-2S)-binding protein -
  LOY27_RS19270 (LOY27_19235) murB 4315825..4316844 (-) 1020 WP_258710382.1 UDP-N-acetylmuramate dehydrogenase -
  LOY27_RS19275 (LOY27_19240) - 4316841..4317305 (-) 465 WP_073472251.1 low molecular weight protein-tyrosine-phosphatase -
  LOY27_RS19280 (LOY27_19245) kdsB 4317305..4318069 (-) 765 WP_071173223.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY27_RS19285 (LOY27_19250) - 4318066..4318251 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY27_RS19290 (LOY27_19255) lpxK 4318275..4319285 (-) 1011 WP_122880418.1 tetraacyldisaccharide 4'-kinase -
  LOY27_RS19295 (LOY27_19260) - 4319285..4319713 (-) 429 WP_016771006.1 biopolymer transporter ExbD -
  LOY27_RS19300 (LOY27_19265) exbB 4319710..4320345 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY27_RS19305 (LOY27_19270) comA 4320447..4322681 (-) 2235 WP_258710383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY27_RS19310 (LOY27_19275) - 4322818..4323336 (+) 519 WP_016770668.1 DUF2062 domain-containing protein -
  LOY27_RS19315 (LOY27_19280) - 4323488..4324267 (-) 780 WP_056788203.1 ABC transporter permease -
  LOY27_RS19320 (LOY27_19285) - 4324264..4325196 (-) 933 WP_095181611.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=627230 LOY27_RS19300 WP_016771007.1 4319710..4320345(-) (exbB) [Pseudomonas atacamensis strain B21-045]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627230 LOY27_RS19300 WP_016771007.1 4319710..4320345(-) (exbB) [Pseudomonas atacamensis strain B21-045]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCGCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCCGGCATGACCACCAATGCTTCGGTATTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858