Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY39_RS14710 Genome accession   NZ_CP087170
Coordinates   3283472..3285697 (-) Length   741 a.a.
NCBI ID   WP_258694745.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain B21-046     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3278472..3290697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY39_RS14675 (LOY39_14655) murB 3278852..3279871 (-) 1020 WP_034098603.1 UDP-N-acetylmuramate dehydrogenase -
  LOY39_RS14680 (LOY39_14660) - 3279868..3280332 (-) 465 WP_034114149.1 low molecular weight protein-tyrosine-phosphatase -
  LOY39_RS14685 (LOY39_14665) kdsB 3280332..3281096 (-) 765 WP_034098606.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY39_RS14690 (LOY39_14670) - 3281093..3281278 (-) 186 WP_011060103.1 Trm112 family protein -
  LOY39_RS14695 (LOY39_14675) lpxK 3281302..3282312 (-) 1011 WP_034098609.1 tetraacyldisaccharide 4'-kinase -
  LOY39_RS14700 (LOY39_14680) - 3282312..3282740 (-) 429 WP_034098611.1 biopolymer transporter ExbD -
  LOY39_RS14705 (LOY39_14685) exbB 3282737..3283372 (-) 636 WP_258694744.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY39_RS14710 (LOY39_14690) comA 3283472..3285697 (-) 2226 WP_258694745.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY39_RS14715 (LOY39_14695) - 3285832..3286347 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  LOY39_RS14720 (LOY39_14700) - 3286351..3287721 (-) 1371 WP_034098617.1 sensor histidine kinase -
  LOY39_RS14725 (LOY39_14705) - 3287708..3288424 (-) 717 WP_034114157.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80374.51 Da        Isoelectric Point: 10.8854

>NTDB_id=627204 LOY39_RS14710 WP_258694745.1 3283472..3285697(-) (comA) [Pseudomonas rhodesiae strain B21-046]
MKTGMFALASGLLALVFLPALPATGWLIAMLVLALMALPFRTYPLAFFLMGLSWACFSAQWALNDRLSLKLDGQTRWVEG
WVAGLPQQTDDGVRFDLIDGRSRKARLPQRIRVSWRGGPPVRSGERWRLAISLKRPSGLLNFHGFDREAWLLARRVGATG
SVKDGERLAPARNAWREGLRQRLLAVDAQGREAGLAALVLGDGSGLSATDWQILQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGVWPRGWPWLPWACGLAFAAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNGVLILEPL
ASLQAGFWLSFAAVAVLILAFSGRLGPWSPWQVWTRPQCVIAIGLFPVLLVLGLPISMSAPLANLVAVPWISLVVLPLAL
LGTALLAVPFVGEGLLWLAGGALQVLFVGLGWLAEYAPAWVPAQVPLAAWLISLLGAVLLLLPKGVPLRLLGWPMLLLAV
FPPREPVPYGQVEVLQLDVGQGQSLILRTRNHTLVYDAGPRSGALDLGARVVLPSLKKLGVGSLDLLLLSHADADHAGGA
AALARGMPIRRLVGGETEGLPAFLGTQPCVSGEQWQWDGVMFEMWQWPDAIGGNAKSCVLQVQANGERLLLTGDIDRDAE
RALLNSPLAVPTHWLQAPHHGSRSSSSRPFLQRLAPRSVLISRGRGNAFGHPHPQVMERYRALGSRVYDSAEQGAVLLQL
GAFAEPVVARGQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=627204 LOY39_RS14710 WP_258694745.1 3283472..3285697(-) (comA) [Pseudomonas rhodesiae strain B21-046]
ATGAAGACAGGGATGTTCGCGCTTGCATCAGGGTTGCTTGCTCTGGTTTTTCTACCGGCACTGCCCGCCACGGGCTGGCT
GATCGCCATGCTGGTGCTGGCGTTGATGGCGTTGCCATTTCGCACGTACCCGCTGGCGTTTTTTCTGATGGGGTTGAGTT
GGGCGTGTTTCAGCGCGCAGTGGGCCTTGAATGATCGGCTGTCGCTGAAGCTGGATGGGCAGACGCGTTGGGTCGAGGGT
TGGGTGGCCGGGTTACCGCAACAGACCGACGATGGCGTGCGCTTCGACCTGATCGACGGGCGGTCGCGTAAAGCCCGATT
ACCCCAGCGCATCCGCGTGTCCTGGCGCGGAGGTCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCAGCCTCA
AACGACCGTCCGGATTACTGAATTTTCACGGCTTTGACCGCGAAGCCTGGCTGTTGGCCCGGCGCGTCGGTGCAACCGGC
TCGGTAAAGGACGGTGAGCGCCTGGCCCCGGCGCGCAATGCGTGGCGCGAAGGCCTGCGTCAACGGTTGCTGGCCGTGGA
TGCCCAAGGCCGCGAGGCGGGCTTGGCCGCTTTGGTGCTGGGGGATGGCTCCGGTCTGTCCGCTACGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGTTGGCGGGGTTGATCTACGGCCTG
GTTGCCGGGTTGGCTCGTTACGGAGTTTGGCCGCGAGGTTGGCCATGGCTACCCTGGGCGTGCGGCCTGGCCTTTGCCGC
TGCGCTCAGTTACGGCTTGCTGGCCGGGTTCGGTGTGCCGGTGCAGCGCGCGTGCGTAATGGTGGGGTTGGTGCTGCTCT
GGCGATTGCGCTTTCGCCATCTGGGCGTGTGGTGGCCGTTGCTGTTGGCCTTCAATGGGGTGCTGATCCTGGAACCCCTG
GCCAGCCTGCAAGCGGGTTTCTGGCTGTCATTTGCGGCAGTGGCGGTGCTGATCCTGGCGTTCAGCGGCCGTTTAGGACC
GTGGAGCCCTTGGCAGGTGTGGACCCGTCCGCAATGCGTGATCGCCATCGGGCTGTTTCCGGTGTTGTTGGTGCTGGGGT
TGCCCATCAGTATGAGTGCGCCGCTGGCCAATCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCACTGGCGCTG
CTGGGCACTGCGCTGTTGGCGGTGCCCTTCGTGGGGGAGGGTTTGTTGTGGCTGGCGGGTGGCGCGTTGCAGGTGTTATT
CGTCGGCTTGGGTTGGCTCGCCGAGTACGCGCCCGCTTGGGTGCCGGCGCAGGTGCCCTTGGCGGCCTGGCTGATCAGCC
TGCTCGGCGCGGTGTTGCTGTTATTGCCCAAAGGCGTGCCGCTGCGCCTGCTGGGTTGGCCGATGCTGTTGCTGGCCGTG
TTCCCTCCTCGAGAACCGGTGCCCTATGGGCAAGTCGAGGTGCTGCAGTTGGACGTCGGTCAAGGGCAATCGCTGATTCT
GCGCACACGCAATCACACCCTGGTTTACGATGCTGGCCCACGTTCGGGAGCGCTCGACCTCGGCGCGCGCGTGGTGCTGC
CGTCGTTGAAAAAACTCGGCGTGGGCAGCTTGGACCTGCTATTGCTCAGCCATGCCGATGCCGATCACGCGGGGGGCGCG
GCCGCATTGGCCCGAGGCATGCCGATCAGGCGCTTGGTAGGCGGCGAAACCGAGGGCTTGCCGGCGTTTTTGGGCACCCA
GCCTTGTGTCAGTGGCGAGCAGTGGCAATGGGACGGGGTCATGTTTGAAATGTGGCAGTGGCCTGATGCTATTGGCGGCA
ACGCGAAATCCTGCGTCTTGCAGGTGCAAGCCAACGGTGAGCGTCTGCTGCTGACCGGCGATATCGATCGCGACGCTGAA
CGGGCGCTGCTCAACTCGCCGCTGGCGGTGCCCACCCACTGGCTGCAAGCGCCGCATCATGGCAGTCGAAGTTCGTCCTC
CAGGCCTTTCTTGCAACGGCTGGCACCCCGGTCTGTGCTTATTTCACGCGGGCGCGGCAACGCCTTCGGTCATCCCCATC
CGCAGGTCATGGAGCGCTATCGGGCACTCGGCAGCCGGGTCTATGACAGCGCCGAACAAGGCGCTGTACTCTTGCAATTA
GGGGCGTTTGCCGAACCGGTCGTTGCCCGTGGTCAACGGCGTTTCTGGCGCGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60

97.166

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.55

100

0.375