Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY39_RS14705 Genome accession   NZ_CP087170
Coordinates   3282737..3283372 (-) Length   211 a.a.
NCBI ID   WP_258694744.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain B21-046     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3277737..3288372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY39_RS14670 (LOY39_14650) - 3278118..3278789 (+) 672 WP_258694743.1 Bax inhibitor-1/YccA family protein -
  LOY39_RS14675 (LOY39_14655) murB 3278852..3279871 (-) 1020 WP_034098603.1 UDP-N-acetylmuramate dehydrogenase -
  LOY39_RS14680 (LOY39_14660) - 3279868..3280332 (-) 465 WP_034114149.1 low molecular weight protein-tyrosine-phosphatase -
  LOY39_RS14685 (LOY39_14665) kdsB 3280332..3281096 (-) 765 WP_034098606.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY39_RS14690 (LOY39_14670) - 3281093..3281278 (-) 186 WP_011060103.1 Trm112 family protein -
  LOY39_RS14695 (LOY39_14675) lpxK 3281302..3282312 (-) 1011 WP_034098609.1 tetraacyldisaccharide 4'-kinase -
  LOY39_RS14700 (LOY39_14680) - 3282312..3282740 (-) 429 WP_034098611.1 biopolymer transporter ExbD -
  LOY39_RS14705 (LOY39_14685) exbB 3282737..3283372 (-) 636 WP_258694744.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY39_RS14710 (LOY39_14690) comA 3283472..3285697 (-) 2226 WP_258694745.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY39_RS14715 (LOY39_14695) - 3285832..3286347 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  LOY39_RS14720 (LOY39_14700) - 3286351..3287721 (-) 1371 WP_034098617.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22797.97 Da        Isoelectric Point: 7.3612

>NTDB_id=627203 LOY39_RS14705 WP_258694744.1 3282737..3283372(-) (exbB) [Pseudomonas rhodesiae strain B21-046]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPVHLLGQVWSWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMSANAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627203 LOY39_RS14705 WP_258694744.1 3282737..3283372(-) (exbB) [Pseudomonas rhodesiae strain B21-046]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCCGCGCTCGGCATCGTTGC
CGAACGTCTGTGGACCCTGCGTGCGAGTCGTGTCACCCCTGTGCATCTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAACTGGACAAGGAAAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGTGAGATTCTGGCCGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATCCACGAACTGGAGCGTTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCACCGGCATGAGCGCTAACGCGGCCGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATTACCACGGCG
GCGGGCTTGATGGTGGGGATTCCATCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCGTCGATGAGCTGGTGGTAGGCAT
GGAGCAGGAAGCCATCAAGCTGGTAGAGGTGGTGCAGGGGGATCGCGACGTGGATCTGGTTGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853