Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY26_RS07165 Genome accession   NZ_CP087169
Coordinates   1565239..1567449 (+) Length   736 a.a.
NCBI ID   WP_258714531.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-047     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1560239..1572449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY26_RS07145 (LOY26_07140) - 1562122..1562745 (+) 624 WP_033700589.1 glutathione S-transferase -
  LOY26_RS07150 (LOY26_07145) - 1562878..1563810 (+) 933 WP_186653745.1 ABC transporter ATP-binding protein -
  LOY26_RS07155 (LOY26_07150) - 1563807..1564586 (+) 780 WP_033700586.1 ABC transporter permease -
  LOY26_RS07160 (LOY26_07155) - 1564599..1565096 (-) 498 Protein_1390 DUF2062 domain-containing protein -
  LOY26_RS07165 (LOY26_07160) comA 1565239..1567449 (+) 2211 WP_258714531.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY26_RS07170 (LOY26_07165) exbB 1567563..1568198 (+) 636 WP_033700585.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY26_RS07175 (LOY26_07170) - 1568195..1568629 (+) 435 WP_186653751.1 biopolymer transporter ExbD -
  LOY26_RS07180 (LOY26_07175) lpxK 1568629..1569639 (+) 1011 WP_186653753.1 tetraacyldisaccharide 4'-kinase -
  LOY26_RS07185 (LOY26_07180) - 1569683..1569868 (+) 186 WP_003247142.1 Trm112 family protein -
  LOY26_RS07190 (LOY26_07185) kdsB 1569865..1570629 (+) 765 WP_047583572.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY26_RS07195 (LOY26_07190) - 1570629..1571093 (+) 465 WP_033700581.1 low molecular weight protein-tyrosine-phosphatase -
  LOY26_RS07200 (LOY26_07195) murB 1571090..1572109 (+) 1020 WP_186653768.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79097.97 Da        Isoelectric Point: 10.8688

>NTDB_id=627180 LOY26_RS07165 WP_258714531.1 1565239..1567449(+) (comA) [Pseudomonas sp. B21-047]
MRTGMFALALGLLCLGFLPVLPSVGWLLVLLLGAVASLFTRLWPLGCFVLGLCWACWSAQHALDDRLAPGLDGRTVWLEG
RVAGLPSRTAQGVRFELEQAASRRGALPRRLQLSWYDGPPLRAGEHWRLAVTLQRPVGLLNPHGPDREAQLLARRIGATG
TVKAGQVLSAVAGGWRDELRQRLLAVDANGRQAALVALVLGDGGGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAMLPLLLALVAVLLVEPL
AGLLPGLWLSFSAVAILIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLLAVPWVSLAVLPLAL
LGTLLLPLPGFGEALLWLAGGLLDVLFRGLAVVAGWRPAWVPPALPLWAWALVGVAALLVLLPRGVPMRGLGGVMLLALW
VPREPVAARQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPAKGEYDLGERVVLPTLRKLGVGSLDLMLISHAHADHAGGAG
AIHRGLPVRRMLGGEALEGLALQPCVSGEQWEWDGVRFSLWRWAEGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERSWL
AAHGATRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGLAIHDTAVDGALRLVLGAQG
AVEGVRGQRRFWRGGE

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=627180 LOY26_RS07165 WP_258714531.1 1565239..1567449(+) (comA) [Pseudomonas sp. B21-047]
ATGCGCACAGGGATGTTTGCGCTCGCACTCGGGCTGCTTTGCCTGGGTTTTCTTCCCGTATTGCCATCGGTCGGATGGCT
GCTTGTGCTGTTGCTCGGCGCCGTCGCCAGCCTGTTCACCCGGTTGTGGCCATTGGGCTGCTTTGTGCTGGGGCTGTGCT
GGGCGTGCTGGTCGGCCCAGCACGCGCTGGACGATCGGCTCGCGCCTGGGCTTGATGGCCGCACAGTGTGGCTGGAGGGC
AGGGTAGCCGGCCTGCCGAGCCGCACCGCGCAAGGTGTGCGGTTCGAGCTGGAGCAGGCCGCTTCGCGGCGTGGCGCATT
GCCACGGCGCTTGCAGCTGAGCTGGTACGACGGGCCGCCACTCAGGGCGGGCGAGCATTGGCGTTTGGCGGTGACCTTGC
AGCGCCCTGTCGGGCTGCTGAACCCGCACGGGCCTGATCGCGAAGCGCAGTTGCTGGCCCGGCGGATTGGCGCCACTGGC
ACGGTCAAGGCTGGGCAGGTGTTGAGCGCAGTGGCCGGTGGCTGGCGGGACGAACTGCGCCAACGCCTGCTGGCGGTCGA
TGCCAACGGCCGGCAGGCGGCGCTGGTGGCGTTGGTGCTTGGGGATGGCGGGGGCCTGGCCCGCGAGGATTGGCAGACGT
TGCAGGCCACGGGCACGGTCCATCTGCTGGTGATCTCTGGGCAGCATATCGGCCTGGTCGCGGGCCTGCTGTATGGCTTG
GTCGCCGGGCTGGCGCGGTGGGGGCTTTGGCCCGCACGGCTGCCCTGGTTGCCCTGGGCGTGTGGCTTGGCCATGGCGGC
AGCACTGGCCTATGGCTGGCTGGCCGGCGCTGGCGTACCGGTACAGCGCGCCTGCCTGATGCTGGCTGTGGTGCTGCTCT
GGCGCCTGCGTTTTCGCCACCTCGGCGCCATGCTGCCGTTGCTGCTGGCGCTGGTCGCGGTGCTGCTGGTCGAACCGTTG
GCGGGGCTGTTGCCTGGGCTCTGGCTGTCGTTTTCTGCCGTGGCCATTCTTATTTATTGCTTCAGCGCCCGGTTGGGCGG
CTGGCGGCCCTGGCAGGCCTGGACGCGCGCGCAGTGGGTGATCGCTATCGGTTTGCTGCCGGTGCTGCTGGCCACTGGTT
TGCCGGTGAGCCTGAGCGCGCCGCTGGCCAATCTGCTGGCGGTACCGTGGGTCAGCCTGGCGGTTTTGCCGTTGGCGTTG
CTGGGTACGTTGCTTTTGCCCCTGCCGGGCTTCGGGGAGGCGCTGTTGTGGCTGGCCGGTGGCTTACTGGATGTGCTGTT
CAGGGGGTTGGCCGTGGTCGCGGGCTGGCGGCCAGCCTGGGTGCCGCCGGCTCTGCCACTGTGGGCCTGGGCGTTGGTTG
GCGTGGCCGCGCTGTTGGTGTTGTTGCCCCGTGGCGTGCCCATGCGCGGGTTGGGTGGGGTCATGCTGCTGGCCCTGTGG
GTACCCAGAGAGCCGGTGGCGGCAAGGCAGGTGGAAGTCTGGCAGTTGGATGTCGGCCAGGGGCTGGCGGTACTGCTGCG
TACCCGTCATCACAGCCTGCTCTACGATGCCGGGCCGGCCAAGGGTGAGTACGACCTGGGCGAGCGGGTGGTGCTGCCAA
CCCTGCGTAAGTTGGGGGTGGGCAGCCTTGACCTGATGTTGATCAGCCACGCCCACGCCGACCATGCGGGCGGTGCTGGG
GCTATCCACCGTGGGCTGCCGGTCAGGCGGATGCTGGGTGGCGAGGCGCTGGAGGGCCTGGCGCTGCAACCATGTGTCAG
TGGGGAGCAATGGGAATGGGATGGGGTGCGCTTTTCGCTATGGCGTTGGGCCGAAGGGCAAAGCAGCAATGACCGCTCTT
GTGTGCTGCTAGTCGAGGCGCAGGGGGAGCGGCTGCTGTTGGCTGGGGATATGGAGGCGGGTGCCGAACGGTCATGGCTG
GCGGCCCACGGGGCGACACGTATCGATTGGTTGCAGTCACCGCACCATGGCAGCCGTAGTTCGTCCACCGAGGCGTTTAT
CCGCGCTACGGCGCCGCGCGGGGTACTGATTTCGCGGGGGCGTAACAACAGTTTTGGTCATCCACATGCGCAAGTGGTCG
AACGTTATCGGCGGCATGGGCTGGCGATTCATGATACGGCGGTGGACGGGGCGTTGCGGTTGGTGTTGGGGGCGCAGGGG
GCGGTGGAAGGTGTGCGCGGGCAGCGGCGGTTTTGGCGGGGTGGGGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.914

97.554

0.575
  comA Ralstonia pseudosolanacearum GMI1000

36.211

100

0.382