Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY26_RS07170 Genome accession   NZ_CP087169
Coordinates   1567563..1568198 (+) Length   211 a.a.
NCBI ID   WP_033700585.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-047     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562563..1573198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY26_RS07150 (LOY26_07145) - 1562878..1563810 (+) 933 WP_186653745.1 ABC transporter ATP-binding protein -
  LOY26_RS07155 (LOY26_07150) - 1563807..1564586 (+) 780 WP_033700586.1 ABC transporter permease -
  LOY26_RS07160 (LOY26_07155) - 1564599..1565096 (-) 498 Protein_1390 DUF2062 domain-containing protein -
  LOY26_RS07165 (LOY26_07160) comA 1565239..1567449 (+) 2211 WP_258714531.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY26_RS07170 (LOY26_07165) exbB 1567563..1568198 (+) 636 WP_033700585.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY26_RS07175 (LOY26_07170) - 1568195..1568629 (+) 435 WP_186653751.1 biopolymer transporter ExbD -
  LOY26_RS07180 (LOY26_07175) lpxK 1568629..1569639 (+) 1011 WP_186653753.1 tetraacyldisaccharide 4'-kinase -
  LOY26_RS07185 (LOY26_07180) - 1569683..1569868 (+) 186 WP_003247142.1 Trm112 family protein -
  LOY26_RS07190 (LOY26_07185) kdsB 1569865..1570629 (+) 765 WP_047583572.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY26_RS07195 (LOY26_07190) - 1570629..1571093 (+) 465 WP_033700581.1 low molecular weight protein-tyrosine-phosphatase -
  LOY26_RS07200 (LOY26_07195) murB 1571090..1572109 (+) 1020 WP_186653768.1 UDP-N-acetylmuramate dehydrogenase -
  LOY26_RS07205 (LOY26_07200) - 1572143..1572568 (-) 426 Protein_1399 DUF1214 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3614

>NTDB_id=627181 LOY26_RS07170 WP_033700585.1 1567563..1568198(+) (exbB) [Pseudomonas sp. B21-047]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHDLERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMIGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627181 LOY26_RS07170 WP_033700585.1 1567563..1568198(+) (exbB) [Pseudomonas sp. B21-047]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCGCCACACCTGCTGGGCCAGGTCTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCTTGCGCGCCGATTCGCCGTTGGGCGAAATCCTCGCTGCGGGCCTGGCCAAC
TCACGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCGTCGCGCGTCATCCACGACCTTGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCGATGGCCCCGCTGCTGGGCTTGCTGGGCACCGTATTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAATGCCGCTGTGCTGGCCGGCGGTATCTCCAAGGCACTGGTCACCACCGCA
GCGGGCTTGATGATCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTAGTCGGTAT
GGAGCAAGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825