Detailed information NTG0627162

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY56_RS22530
• Genome accession: NZ_CP087168
• Coordinates: 4811549..4812889 (+)
• Length: 446 a.a.
• NCBI ID: WP_258617173.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-048
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4806549..4817889

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY56_RS22505 (LOY56_22455)	pgeF	4806741..4807466 (-)	726	WP_258617169.1	peptidoglycan editing factor PgeF	-
LOY56_RS22510 (LOY56_22460)	rluD	4807463..4808425 (-)	963	WP_223485945.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY56_RS22515 (LOY56_22465)	-	4808577..4809599 (+)	1023	WP_258617170.1	outer membrane protein assembly factor BamD	-
LOY56_RS22520 (LOY56_22470)	-	4809737..4809970 (+)	234	WP_258617171.1	PP0621 family protein	-
LOY56_RS22525 (LOY56_22475)	pilS	4809960..4811546 (+)	1587	WP_258617172.1	PAS domain-containing sensor histidine kinase	Regulator
LOY56_RS22530 (LOY56_22480)	pilR	4811549..4812889 (+)	1341	WP_258617173.1	sigma-54 dependent transcriptional regulator	Regulator
LOY56_RS22535 (LOY56_22485)	thiO	4812957..4814057 (-)	1101	WP_258617174.1	glycine oxidase ThiO	-
LOY56_RS22540 (LOY56_22490)	-	4814115..4814519 (-)	405	WP_258617175.1	type IV pilin protein	-
LOY56_RS22545 (LOY56_22495)	-	4814534..4817656 (-)	3123	WP_258617176.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49641.17 Da
• Isoelectric Point: 6.6137

>NTDB_id=627162 LOY56_RS22530 WP_258617173.1 4811549..4812889(+) (pilR) [Pseudomonas sp. B21-048]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARETFDLCLTDMRLPDGTGLALVQHIQQCYAQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVISALSLPAPGGTHVAIDRRLLGASLPMRNLRKQIDKLARSQAPV
YISGESGSGKELVARLIHDQGPRATQAFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIELLANN
MLNRLAASTGQPVAKLHPQALEAMKSYRFPGNVRELENMLERAYTLCENKQIEASDLRLAEGNCNPDGGVPDLTQIDNLE
AYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=627162 LOY56_RS22530 WP_258617173.1 4811549..4812889(+) (pilR) [Pseudomonas sp. B21-048]
ATGAGCCCACGGCAAAAAATCCTGATTGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGCGCCCGCAACCTCGCAGAAGCGCAAGCACTGCTGGCACGGGAGACGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGTCTTGCCCTGGTTCAGCACATCCAGCAGTGCTATGCGCAAGTGCCGGTAGCG
ATGATTACCGCCTACGGCAGCCTGGAGACGGCAATCAACGCCCTCAAGGCCGGCGCCTTCGATTTTCTGACTAAACCGGT
AGACCTCACCCGCCTGCGCGAACTGGTCATCAGCGCATTGAGTTTGCCTGCACCAGGCGGCACCCATGTCGCTATCGATC
GACGGCTACTGGGCGCCTCACTGCCGATGCGCAACCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAGGCTCCGGTG
TACATCAGCGGCGAGTCCGGCAGTGGCAAGGAGTTGGTCGCCAGATTGATCCACGACCAAGGACCACGCGCCACCCAAGC
GTTCATTCCGGTGAACTGTGGAGCGATCCCGTCGGAATTGATGGAAAGCGAGTTTTTCGGCCATCGTAAAGGCAGTTTCA
GCGGTGCGATCGAAGACAAACCCGGTCTGTTCCAGGCCGCCCATGGTGGCACGTTGTTCCTCGACGAAGTGGCAGACTTG
CCGCTGGCGATGCAGGTCAAACTGCTGCGGGCGATTCAGGAGAAAGCCGTTCGCAGCATCGGTGGGCAGCAGGAAACCGT
AGTCGATGTGCGCATTCTCTGTGCCACCCACAAAGACCTTGATGCCGAAGTCGCTGCCGAACGCTTTCGCCAGGACTTGT
ACTACCGACTCAACGTGATCGAACTGCGGGTGCCGCCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTGGCCAACAAC
ATGCTCAATCGATTGGCCGCCAGTACCGGCCAACCCGTCGCAAAACTCCACCCGCAAGCCCTCGAAGCCATGAAAAGCTA
TCGCTTTCCAGGGAACGTGCGGGAATTGGAAAACATGCTTGAGCGGGCGTACACCTTGTGCGAGAACAAACAAATCGAAG
CCAGCGACCTTCGACTGGCCGAAGGTAACTGCAACCCGGACGGCGGTGTGCCGGACCTGACGCAGATCGACAATCTGGAA
GCCTATCTGGAAAACGTCGAACGCAAACTCATCCTACAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCTGCGGCTCA
GCGGCTGAATCTGTCGTTTCGGTCGATGCGTTATCGACTTAAGAAATTGGGTTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.33	99.327	0.778
pilR	Acinetobacter baumannii strain A118	49.02	100	0.504