Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY56_RS22525 Genome accession   NZ_CP087168
Coordinates   4809960..4811546 (+) Length   528 a.a.
NCBI ID   WP_258617172.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-048     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4804960..4816546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY56_RS22505 (LOY56_22455) pgeF 4806741..4807466 (-) 726 WP_258617169.1 peptidoglycan editing factor PgeF -
  LOY56_RS22510 (LOY56_22460) rluD 4807463..4808425 (-) 963 WP_223485945.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY56_RS22515 (LOY56_22465) - 4808577..4809599 (+) 1023 WP_258617170.1 outer membrane protein assembly factor BamD -
  LOY56_RS22520 (LOY56_22470) - 4809737..4809970 (+) 234 WP_258617171.1 PP0621 family protein -
  LOY56_RS22525 (LOY56_22475) pilS 4809960..4811546 (+) 1587 WP_258617172.1 PAS domain-containing sensor histidine kinase Regulator
  LOY56_RS22530 (LOY56_22480) pilR 4811549..4812889 (+) 1341 WP_258617173.1 sigma-54 dependent transcriptional regulator Regulator
  LOY56_RS22535 (LOY56_22485) thiO 4812957..4814057 (-) 1101 WP_258617174.1 glycine oxidase ThiO -
  LOY56_RS22540 (LOY56_22490) - 4814115..4814519 (-) 405 WP_258617175.1 type IV pilin protein -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 58711.80 Da        Isoelectric Point: 7.3961

>NTDB_id=627161 LOY56_RS22525 WP_258617172.1 4809960..4811546(+) (pilS) [Pseudomonas sp. B21-048]
MITETSSPGNKQTQRLLRLYHLYRLSIGITLVLLISSNMDNQLLTFANDDLLRNGSWLYLVLNILLVVFLANTRRPAQLF
SLVLVDILLLCGLFYAAGGVASAIGNLLIVSVAIGNTLLRGRIGLLIAAVGALGIVGLSFLLSFNHPASASDYLQVGTLG
ALCFAAALLVQGLIRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDEQRRVQLANHSALTLLGREKLDGQLID
DHSIPLVERLQLWLNNPTLRPQSLKIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNTTDRRLTQIIQDHSQRMNRVIENVLQLSRRQQSVPQRLDLKPWLEHFVVETRESASKC
QHIHLRISLGDFKTLMDPNQLTQILDNLLRNAWRHSALMHNQAQAWLELYIDPDSQLPTLEVLDDGPGVAPDQRSHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=627161 LOY56_RS22525 WP_258617172.1 4809960..4811546(+) (pilS) [Pseudomonas sp. B21-048]
GTGATCACTGAGACGTCCAGTCCCGGTAACAAACAGACCCAGCGACTGCTGCGTCTCTATCACCTCTACCGTTTAAGCAT
CGGCATTACCTTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGACATTCGCCAATGACGATCTGCTGCGCA
ATGGCAGTTGGTTGTACCTGGTGCTGAATATCTTGCTGGTAGTCTTTCTGGCGAACACCCGGCGCCCGGCGCAGTTGTTC
AGCCTGGTGCTGGTCGATATCTTGCTGCTGTGCGGCCTGTTCTATGCCGCCGGCGGCGTGGCCAGCGCCATCGGCAACTT
GTTGATCGTGTCGGTGGCCATCGGCAATACCTTGCTGCGCGGACGAATCGGCCTGCTGATCGCAGCAGTCGGCGCCCTCG
GCATCGTGGGTTTGAGCTTCCTGCTGAGCTTCAACCACCCTGCCAGCGCCAGCGATTACCTGCAAGTCGGCACCCTCGGC
GCTTTGTGTTTTGCCGCGGCATTGCTGGTGCAAGGCTTGATCCGACGACTGGAAGTCAGCGAAACCCTGGCCGAACAGCG
GGCCAGCGAAGTACTCGGCCTCGAAGCCCTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AGCAGCGACGGGTACAACTGGCCAATCACAGCGCCCTGACCTTGCTGGGGCGGGAAAAACTGGATGGGCAGTTGATCGAC
GATCATTCGATACCGTTGGTCGAGCGGCTCCAACTGTGGCTCAACAATCCGACTTTACGCCCACAAAGCCTGAAAATCGC
CAGCAATGGCCTGGAGCTGCAACCGAGCTTCATTGCCCTGGACCAAAGTCCGCACCACCAGACACTGGTCTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAGCAACTGAAACTCGCCGCCCTCGGTCGCCTGACCGCCGGTATTGCCCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCACAGTTACTGCAGGAATCCGAGGAACTGAACACCACGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGCATGAATCGGGTAATCGAAAACGTCCTGCAACTTTCCCGTCGCCAGC
AAAGCGTGCCGCAACGGCTCGATTTGAAACCATGGCTGGAGCACTTCGTCGTCGAAACCCGCGAAAGCGCGAGCAAATGT
CAGCACATTCACCTGCGCATCAGTCTGGGGGACTTCAAAACCCTGATGGATCCAAATCAGCTGACCCAGATTCTTGACAA
TCTCTTACGAAATGCCTGGCGCCATAGCGCACTGATGCACAATCAGGCGCAGGCCTGGCTTGAGTTGTACATCGACCCGG
ACAGCCAGTTGCCCACCCTTGAAGTCCTGGACGATGGCCCCGGCGTAGCACCGGACCAGCGCTCGCACTTGTTCGAACCG
TTTTTCACCACCAGCAGCCAGGGTACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.077

98.674

0.593