Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LOY49_RS22505 Genome accession   NZ_CP087167
Coordinates   5026615..5027961 (+) Length   448 a.a.
NCBI ID   WP_016773136.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain B21-050     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5021615..5032961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY49_RS22480 (LOY49_22450) pgeF 5021830..5022552 (-) 723 WP_258603698.1 peptidoglycan editing factor PgeF -
  LOY49_RS22485 (LOY49_22455) rluD 5022549..5023511 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY49_RS22490 (LOY49_22460) - 5023663..5024679 (+) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  LOY49_RS22495 (LOY49_22465) - 5024806..5025039 (+) 234 WP_016773138.1 PP0621 family protein -
  LOY49_RS22500 (LOY49_22470) pilS 5025029..5026618 (+) 1590 WP_122750955.1 PAS domain-containing sensor histidine kinase Regulator
  LOY49_RS22505 (LOY49_22475) pilR 5026615..5027961 (+) 1347 WP_016773136.1 sigma-54 dependent transcriptional regulator Regulator
  LOY49_RS22510 (LOY49_22480) thiO 5028050..5029150 (-) 1101 WP_122698539.1 glycine oxidase ThiO -
  LOY49_RS22515 (LOY49_22485) - 5029207..5029608 (-) 402 WP_016773135.1 type IV pilin protein -
  LOY49_RS22520 (LOY49_22490) - 5029624..5032713 (-) 3090 WP_258603701.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50176.49 Da        Isoelectric Point: 6.3600

>NTDB_id=627131 LOY49_RS22505 WP_016773136.1 5026615..5027961(+) (pilR) [Pseudomonas atacamensis strain B21-050]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=627131 LOY49_RS22505 WP_016773136.1 5026615..5027961(+) (pilR) [Pseudomonas atacamensis strain B21-050]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCCCGCAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTAGCGATGATCACGGCGTACGGAAGCCTGGAAACTGCGATCAATGCGCTGAAGGCCGGGGCGTTCGACTTCCTCACCAA
ACCGGTGGAACTGCCGCGCTTGCGCGAACTGGTCAGCTCGGCGCTACGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCA
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCACGTCTGATCCACGAACAAGGTCCGCGCGCCAG
CCAACCCTTTGTGCCGGTGAACTGCGGGGCGATTCCGTCAGAGCTGATGGAAAGCGAGTTCTTCGGTCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTGTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATTTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTGGATGTGCGCATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCAGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGTGTGCCGTCCCTGCGCGAACGCCGTGACGACATTGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGATCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAACGCAAACTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGCTATCGGCTGAAGAAATTGGGCTTGGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.33

98.884

0.775
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504