Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY49_RS22500 Genome accession   NZ_CP087167
Coordinates   5025029..5026618 (+) Length   529 a.a.
NCBI ID   WP_122750955.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain B21-050     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5020029..5031618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY49_RS22480 (LOY49_22450) pgeF 5021830..5022552 (-) 723 WP_258603698.1 peptidoglycan editing factor PgeF -
  LOY49_RS22485 (LOY49_22455) rluD 5022549..5023511 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY49_RS22490 (LOY49_22460) - 5023663..5024679 (+) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  LOY49_RS22495 (LOY49_22465) - 5024806..5025039 (+) 234 WP_016773138.1 PP0621 family protein -
  LOY49_RS22500 (LOY49_22470) pilS 5025029..5026618 (+) 1590 WP_122750955.1 PAS domain-containing sensor histidine kinase Regulator
  LOY49_RS22505 (LOY49_22475) pilR 5026615..5027961 (+) 1347 WP_016773136.1 sigma-54 dependent transcriptional regulator Regulator
  LOY49_RS22510 (LOY49_22480) thiO 5028050..5029150 (-) 1101 WP_122698539.1 glycine oxidase ThiO -
  LOY49_RS22515 (LOY49_22485) - 5029207..5029608 (-) 402 WP_016773135.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58628.34 Da        Isoelectric Point: 6.8633

>NTDB_id=627130 LOY49_RS22500 WP_122750955.1 5025029..5026618(+) (pilS) [Pseudomonas atacamensis strain B21-050]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHMID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGEIREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPDSQLAVLEVQDNGPGVSAEEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627130 LOY49_RS22500 WP_122750955.1 5025029..5026618(+) (pilS) [Pseudomonas atacamensis strain B21-050]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAACATGCTGCTGGTGGTGTTCCTTGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCGCTTGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTCGCCAGTGCGCTGGGCAATTT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATTGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCCTCGCTGCTGGTGCAAGGGTTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTGGAGGCGCTGAACGCGTTGATCCTGCAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AGCAACGTCGGGTGCAACTGGCCAATCACAGCGCGCAGAGTCTGCTCGGCCACAGTCACCTGCAAGGTCATATGATCGAC
GAATATTCGCCAGCACTGGTCGAGCGTCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAGCCCAGTTTCATCGCCCTTGAGCAGAGCCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAATCCGCGAGCAGGCCAATGAGCGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACGCTTATGGACCCCAACCAGTTGCGGCAGATTCTCGACAA
TCTGATACGCAATGCCTGGCGTCACAGCGCCCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCGG
ACAGCCAGTTGGCGGTGCTTGAGGTCCAGGACAACGGCCCCGGCGTGTCGGCCGAGGAACAGGCGCATCTCTTTGAACCC
TTCTTCACTACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595