Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY52_RS19400 Genome accession   NZ_CP087166
Coordinates   4334305..4336518 (-) Length   737 a.a.
NCBI ID   WP_258675645.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-051     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4329305..4341518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY52_RS19365 (LOY52_19340) murB 4329675..4330694 (-) 1020 WP_258675641.1 UDP-N-acetylmuramate dehydrogenase -
  LOY52_RS19370 (LOY52_19345) - 4330691..4331155 (-) 465 WP_007967581.1 low molecular weight protein-tyrosine-phosphatase -
  LOY52_RS19375 (LOY52_19350) kdsB 4331155..4331919 (-) 765 WP_258675643.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY52_RS19380 (LOY52_19355) - 4331916..4332101 (-) 186 WP_003174668.1 Trm112 family protein -
  LOY52_RS19385 (LOY52_19360) lpxK 4332123..4333133 (-) 1011 WP_258675644.1 tetraacyldisaccharide 4'-kinase -
  LOY52_RS19390 (LOY52_19365) - 4333133..4333561 (-) 429 WP_097088472.1 biopolymer transporter ExbD -
  LOY52_RS19395 (LOY52_19370) exbB 4333558..4334193 (-) 636 WP_003227083.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY52_RS19400 (LOY52_19375) comA 4334305..4336518 (-) 2214 WP_258675645.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY52_RS19405 (LOY52_19380) - 4336655..4337173 (+) 519 WP_258675646.1 DUF2062 domain-containing protein -
  LOY52_RS19410 (LOY52_19385) - 4337350..4338129 (-) 780 WP_098965044.1 ABC transporter permease -
  LOY52_RS19415 (LOY52_19390) - 4338126..4339058 (-) 933 WP_027612335.1 ABC transporter ATP-binding protein -
  LOY52_RS19420 (LOY52_19395) - 4339192..4339815 (-) 624 WP_258675647.1 glutathione S-transferase family protein -
  LOY52_RS19425 (LOY52_19400) - 4339859..4340518 (-) 660 WP_258675648.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 81024.46 Da        Isoelectric Point: 10.4701

>NTDB_id=627093 LOY52_RS19400 WP_258675645.1 4334305..4336518(-) (comA) [Pseudomonas sp. B21-051]
MRTGMMALAVGLLVAVFLPVLPPVGLMMLLPLVGLMLLPFRSYPLALLLFGFTWACVSAQWALNDRLPEALDGETRWVEG
RVIGLPQTSEGVVRFELADARSRHEKLPSLMRLAWYAGPPLNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEANWAWRDSIRQRLLEVDAQGRGGALAALVLGDGSGLSREDWQILQNTGTVHLLVISGQHIGMLAAVIYLL
VAGLARLGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFDALLLLDPL
ASLRPGLWLSFAAVGILIFTFRGRLGAWKWWQTWTRAQWLIALGLCPVLLALNLPIAPSGPLANLLAVPWVSLLVLPPAL
LGTLLLPVPYVGAGLLWLAGGLIDWLFRGLSVIAGAWPAWISPSLPWWGLLIGCLGAVLLLLPRGVPLRPLGWPLLLILL
APPRERVAEGLADVWQLDVGQGLAILIRTRHHALLYDAGPRFGDFDLGERVVLPALHKLGVNRIDLMLLSHADADHAGGA
LAVSRGLKVTRVISGDPPGLPAILQAEACESGRQWQWDGVRFQLWQWSAAHDSNQRSCVLQIEANGERLLLTGDIDTAAE
RGLLESPLAVPTHWLQAPHHGSRSSSSMALLRALRPHSVLISRGQGNSFGHPHPLVLARYRQQGLRIYDSAQHGAIHLRL
GSFQSPWLMRQPRRFWR

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=627093 LOY52_RS19400 WP_258675645.1 4334305..4336518(-) (comA) [Pseudomonas sp. B21-051]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGTTGCGGTTTTTTTGCCGGTTTTACCGCCGGTCGGGTTGAT
GATGTTGTTGCCGTTGGTGGGACTGATGTTGCTGCCGTTTCGCAGCTATCCCCTGGCGTTGCTGCTGTTCGGTTTCACCT
GGGCGTGCGTCAGTGCGCAATGGGCGTTGAATGATCGCCTGCCTGAGGCGCTCGACGGCGAAACCCGTTGGGTCGAAGGG
CGGGTGATCGGCTTACCGCAAACCAGCGAGGGCGTGGTGCGTTTCGAGCTGGCCGATGCCCGCTCGCGTCACGAGAAGCT
GCCTTCGTTGATGCGTCTGGCGTGGTACGCCGGGCCGCCGCTCAACAGTGGCGAGCGCTGGCGCCTGGCGGTAAAGCTCA
AGCGCCCGGGTGGTTTGCTCAATCCCGATGCCTTTGATTACGAAGCCTGGCTGTTGGCGCAACGCATTGGCGCGACCGGC
ACGATCAAGGATGGTCAGCGCTTGGCCGAGGCAAATTGGGCATGGCGCGACAGCATTCGGCAGCGCTTGCTTGAAGTGGA
CGCGCAGGGCCGGGGTGGTGCATTGGCGGCTCTGGTGCTCGGTGACGGCTCCGGGCTCAGTCGCGAGGACTGGCAGATCT
TGCAGAACACCGGCACCGTGCATCTGCTGGTGATTTCCGGCCAACACATCGGGATGTTGGCGGCGGTCATCTATTTGTTG
GTCGCCGGGCTGGCGCGTTTAGGACTGTGGCCGCTGCGTTGGCCCTGGCTGCCTTGGGCCTGTGGGCTGGCGTTTGCTGC
GGCGCTCGGTTACGGCTTGCTCGCCGGGTTTGACGTGCCGGTGCAACGGGCCTGTGTGATGGTCGGGCTGGTGTTGCTGT
GGCGCCTGCGCTTTCGCCATCTCGGCGCGTGGTGGCCGCTGTTGCTGGCATTCGATGCGCTGCTGTTGCTTGACCCGTTA
GCCAGTCTGCGTCCGGGGTTGTGGCTGTCGTTCGCCGCGGTGGGGATTTTGATTTTCACCTTCCGCGGGCGACTCGGTGC
GTGGAAATGGTGGCAGACCTGGACTCGCGCGCAATGGCTGATTGCGCTGGGGCTGTGCCCGGTGTTGCTGGCGCTGAACC
TGCCGATCGCCCCCAGTGGGCCATTGGCGAATCTGCTCGCGGTGCCGTGGGTCAGTCTGCTGGTGCTGCCGCCGGCGCTG
CTCGGCACGCTGTTGTTGCCGGTGCCTTACGTCGGTGCAGGCTTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TCGCGGCTTGTCGGTAATAGCCGGGGCCTGGCCGGCGTGGATCTCGCCGTCGCTGCCGTGGTGGGGCTTGTTGATTGGCT
GTCTCGGCGCCGTGTTGTTGCTGTTGCCGCGCGGAGTGCCATTGCGACCGTTGGGCTGGCCGTTGCTGTTGATTCTGCTG
GCGCCGCCTCGCGAGCGAGTGGCCGAGGGCCTGGCCGATGTCTGGCAGCTCGATGTCGGTCAGGGCCTGGCGATCCTGAT
CCGCACGCGTCATCATGCGTTGCTCTACGACGCCGGTCCACGCTTCGGCGATTTCGATCTGGGGGAGCGGGTGGTGCTGC
CGGCGCTGCACAAACTGGGGGTTAACCGCATCGATCTGATGCTGCTCAGTCATGCCGACGCCGACCATGCCGGTGGTGCA
TTGGCGGTATCGCGGGGCCTGAAAGTGACGCGGGTGATCAGCGGCGATCCGCCGGGGCTGCCCGCCATCCTGCAGGCCGA
GGCCTGTGAAAGCGGGCGCCAATGGCAATGGGACGGGGTCCGGTTTCAGCTGTGGCAATGGTCGGCGGCCCATGACAGCA
ATCAGCGCTCTTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGTCTGCTGCTGACCGGTGATATCGACACGGCTGCCGAA
CGGGGTCTGCTGGAGAGTCCGTTGGCGGTGCCGACGCACTGGCTGCAAGCACCGCACCACGGCAGCCGCAGTTCCTCATC
GATGGCTTTGCTGCGGGCATTACGCCCCCATTCGGTGCTGATCTCCCGGGGGCAGGGCAATTCGTTCGGTCATCCACACC
CGCTGGTGCTCGCGCGTTATCGCCAGCAAGGGCTGCGCATCTACGACAGCGCGCAGCACGGCGCCATCCATCTGCGTCTG
GGCAGCTTTCAGTCGCCGTGGCTGATGCGTCAACCACGGCGTTTCTGGCGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.699

97.422

0.601
  comA Ralstonia pseudosolanacearum GMI1000

34.954

100

0.361