Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY52_RS19395 Genome accession   NZ_CP087166
Coordinates   4333558..4334193 (-) Length   211 a.a.
NCBI ID   WP_003227083.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-051     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4328558..4339193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY52_RS19365 (LOY52_19340) murB 4329675..4330694 (-) 1020 WP_258675641.1 UDP-N-acetylmuramate dehydrogenase -
  LOY52_RS19370 (LOY52_19345) - 4330691..4331155 (-) 465 WP_007967581.1 low molecular weight protein-tyrosine-phosphatase -
  LOY52_RS19375 (LOY52_19350) kdsB 4331155..4331919 (-) 765 WP_258675643.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY52_RS19380 (LOY52_19355) - 4331916..4332101 (-) 186 WP_003174668.1 Trm112 family protein -
  LOY52_RS19385 (LOY52_19360) lpxK 4332123..4333133 (-) 1011 WP_258675644.1 tetraacyldisaccharide 4'-kinase -
  LOY52_RS19390 (LOY52_19365) - 4333133..4333561 (-) 429 WP_097088472.1 biopolymer transporter ExbD -
  LOY52_RS19395 (LOY52_19370) exbB 4333558..4334193 (-) 636 WP_003227083.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY52_RS19400 (LOY52_19375) comA 4334305..4336518 (-) 2214 WP_258675645.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY52_RS19405 (LOY52_19380) - 4336655..4337173 (+) 519 WP_258675646.1 DUF2062 domain-containing protein -
  LOY52_RS19410 (LOY52_19385) - 4337350..4338129 (-) 780 WP_098965044.1 ABC transporter permease -
  LOY52_RS19415 (LOY52_19390) - 4338126..4339058 (-) 933 WP_027612335.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22917.00 Da        Isoelectric Point: 6.8768

>NTDB_id=627092 LOY52_RS19395 WP_003227083.1 4333558..4334193(-) (exbB) [Pseudomonas sp. B21-051]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627092 LOY52_RS19395 WP_003227083.1 4333558..4334193(-) (exbB) [Pseudomonas sp. B21-051]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCGCGGGTGATTCACGAGCTCGAACGCTACGT
CAACGCGCTGGGCACGATTGCCGCCATGTCGCCGTTGCTGGGCCTGTTGGGCACGGTACTGGGCATGATCGACATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCCTCGGTCCTGGCCGGCGGTATTTCCAAGGCACTGATTACCACTGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCATCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839