Detailed information NTG0627065

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY46_RS07885
• Genome accession: NZ_CP087165
• Coordinates: 1696762..1698981 (+)
• Length: 739 a.a.
• NCBI ID: WP_258706001.1
• Uniprot ID: -
• Organism: Pseudomonas sichuanensis strain B21-052
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1691762..1703981

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY46_RS07855 (LOY46_07850)	-	1692640..1692891 (-)	252	WP_258705997.1	DUF3077 domain-containing protein	-
LOY46_RS07860 (LOY46_07855)	-	1692888..1693127 (-)	240	WP_258705998.1	hypothetical protein	-
LOY46_RS07865 (LOY46_07860)	-	1693641..1694264 (+)	624	WP_258705999.1	glutathione S-transferase	-
LOY46_RS07870 (LOY46_07865)	-	1694400..1695332 (+)	933	WP_258706000.1	ABC transporter ATP-binding protein	-
LOY46_RS07875 (LOY46_07870)	-	1695329..1696108 (+)	780	WP_125463214.1	ABC transporter permease	-
LOY46_RS07880 (LOY46_07875)	-	1695992..1696618 (-)	627	WP_125463215.1	DUF2062 domain-containing protein	-
LOY46_RS07885 (LOY46_07880)	comA	1696762..1698981 (+)	2220	WP_258706001.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY46_RS07890 (LOY46_07885)	exbB	1699397..1700032 (+)	636	WP_138221286.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY46_RS07895 (LOY46_07890)	-	1700029..1700463 (+)	435	WP_125463217.1	biopolymer transporter ExbD	-
LOY46_RS07900 (LOY46_07895)	lpxK	1700463..1701467 (+)	1005	WP_258706002.1	tetraacyldisaccharide 4'-kinase	-
LOY46_RS07905 (LOY46_07900)	-	1701508..1701693 (+)	186	WP_125463219.1	Trm112 family protein	-
LOY46_RS07910 (LOY46_07905)	kdsB	1701690..1702454 (+)	765	WP_125463220.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY46_RS07915 (LOY46_07910)	-	1702454..1702918 (+)	465	WP_258706003.1	low molecular weight protein-tyrosine-phosphatase	-
LOY46_RS07920 (LOY46_07915)	murB	1702915..1703934 (+)	1020	WP_258706004.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 739 a.a.
• Molecular weight: 79827.60 Da
• Isoelectric Point: 10.7419

>NTDB_id=627065 LOY46_RS07885 WP_258706001.1 1696762..1698981(+) (comA) [Pseudomonas sichuanensis strain B21-052]
MRTGMLALALGLLSLRFLPALPPVGWLLALSLLGLACLRTRGWPLGCYLLGLCWACWSAQQVLDDRLAAALDGRTLWLEG
RVVGLPARTEHGVRFELEQASSRRAELPQRLQLSWFDGPGLRGGERWRLAVNLRRPHGLLNPHGPDREATLLARRIGATG
TVKAGERLGAPAHDWRDGIRQRLLAVDAHGREAALAALVLGDGAGLARQDWQALQTTGTVHLLVISGQHIGLLAGLVYGG
VAGLARLGAWPRRLPWLPWACGLAMGAALLYGWLAGFGVPVQRACLMLAVVLLWRLRFRQLGVGLPLLLALLGVLLVEPL
ASLLPGFWLSFAAVAVLALCFSARLGAWRPWQAWTRAQWVIAVGLLPVLLALGLPISLTAPLANLLAVPWLSLAVLPLAL
LGTALLPLPWLGEGLLWLAGASLHGLFGWLAQVAGLVPAWIGEPLPLWAGLLVGLGALLVLLPRGVPLRVPGAVLLLALW
APREQVPHGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPAMGESDLGESVVLPTLRKLGVRQLDLMLISHAHADHAGGAG
AVHRGLPVKRVLAGEAMALAAGLHGQPCKSGERWQWDGVDFELWHWPGGPNSNERSCVLRVEANGERLLLAGDMEAGAER
AWLAATEDPRIDWLQSPHHGSRTSSSEALIRAMAPRGVLISRGRHNGFGHPHPQVIERYRRQGMSIHDTALEGALRLWLG
RHGGVEGARGQRRFWRDQE

Nucleotide

• Length: 2220 bp

>NTDB_id=627065 LOY46_RS07885 WP_258706001.1 1696762..1698981(+) (comA) [Pseudomonas sichuanensis strain B21-052]
ATGCGCACAGGGATGCTTGCGCTCGCGCTCGGGCTGTTGAGCCTGCGCTTTCTGCCTGCTCTGCCACCGGTCGGGTGGTT
GCTTGCATTGTCATTGCTGGGGCTGGCCTGCCTGCGTACGCGAGGCTGGCCGCTTGGCTGTTACCTGTTGGGGCTGTGCT
GGGCGTGCTGGTCGGCGCAGCAGGTATTGGATGATCGGCTGGCCGCGGCACTGGACGGGCGTACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCGGCGCGCACCGAGCACGGTGTGCGCTTCGAGCTGGAGCAGGCCAGCTCGCGTCGGGCCGAGTT
GCCGCAGCGGTTGCAACTGAGCTGGTTCGATGGCCCTGGGTTACGCGGCGGGGAGCGCTGGCGGCTGGCGGTCAACTTGC
GGCGCCCGCATGGGTTGCTCAACCCCCATGGCCCGGACCGCGAGGCTACCCTGCTGGCACGGCGGATCGGCGCGACCGGC
ACGGTCAAGGCGGGTGAGCGGCTGGGCGCTCCCGCCCATGACTGGCGTGACGGTATCCGCCAACGCTTGCTGGCGGTCGA
CGCCCATGGGCGTGAGGCGGCCCTGGCGGCGCTGGTGCTGGGCGATGGCGCGGGGCTGGCGCGCCAGGACTGGCAGGCCC
TGCAAACCACCGGCACGGTCCACCTGCTGGTGATCTCCGGGCAGCATATCGGGCTGCTGGCCGGGTTGGTCTATGGCGGG
GTGGCCGGGCTGGCCCGCCTGGGCGCCTGGCCGCGACGCCTGCCTTGGTTGCCCTGGGCCTGCGGCCTGGCCATGGGGGC
GGCGCTGCTGTACGGCTGGCTGGCGGGCTTTGGCGTGCCGGTACAGCGTGCCTGCCTGATGCTGGCGGTGGTACTGCTGT
GGCGCCTGCGCTTTCGCCAGCTGGGCGTGGGGCTGCCCTTGTTGCTGGCGCTGCTGGGGGTGTTGCTGGTCGAGCCGCTG
GCCAGCCTGTTGCCGGGCTTCTGGCTGTCGTTCGCCGCCGTGGCGGTGCTGGCGCTGTGTTTTTCCGCCCGGCTGGGCGC
CTGGCGGCCTTGGCAGGCCTGGACGCGGGCGCAATGGGTGATCGCCGTGGGCCTGCTGCCGGTGCTGTTGGCGCTGGGCT
TGCCGATCAGCCTTACGGCGCCGCTGGCCAACCTGCTGGCGGTACCGTGGCTGAGCCTGGCGGTGCTGCCCTTGGCCTTG
CTCGGTACCGCGCTGTTGCCGCTGCCCTGGCTGGGGGAGGGGCTGTTGTGGCTGGCGGGCGCTTCGCTGCACGGCCTGTT
TGGCTGGCTTGCCCAGGTGGCAGGGCTGGTGCCGGCGTGGATTGGCGAGCCACTGCCGCTGTGGGCCGGGCTGCTGGTGG
GGCTTGGCGCGTTGCTGGTGCTGTTGCCTCGGGGCGTGCCCTTGCGTGTGCCGGGTGCGGTCCTGTTGCTGGCCCTGTGG
GCGCCACGTGAGCAGGTGCCGCATGGTCAGGTCGAAGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGTTGCTGCG
CACCCGCCAGCACAGCCTGTTGTATGACGCCGGGCCTGCGATGGGAGAGAGCGACCTGGGCGAAAGCGTGGTGCTGCCGA
CCTTGCGCAAGCTTGGGGTGCGGCAGTTGGATCTGATGCTGATCAGCCATGCCCATGCCGACCATGCCGGGGGCGCCGGG
GCCGTTCATCGCGGGCTGCCGGTGAAACGGGTGCTGGCCGGCGAAGCGATGGCGTTGGCGGCAGGCTTGCACGGCCAGCC
CTGCAAGAGTGGCGAGCGCTGGCAGTGGGATGGTGTCGATTTCGAGCTCTGGCACTGGCCGGGCGGGCCCAACAGCAATG
AGCGTTCCTGTGTGCTGCGGGTCGAGGCCAATGGCGAGCGGCTGCTGCTGGCAGGCGACATGGAGGCAGGGGCCGAGCGG
GCCTGGCTGGCCGCGACGGAGGATCCGCGTATCGACTGGCTGCAGTCGCCGCATCATGGCAGCCGCACGTCGTCCAGCGA
GGCGCTCATCAGGGCCATGGCCCCACGAGGGGTGTTGATATCGCGCGGGCGGCACAATGGGTTCGGGCATCCTCATCCGC
AGGTGATCGAGCGCTATCGGCGGCAGGGTATGAGCATTCATGACACGGCCTTGGAGGGCGCACTGCGGTTGTGGTTGGGG
CGCCATGGTGGGGTGGAGGGCGCGCGGGGGCAGCGGCGGTTCTGGCGCGATCAGGAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-678)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.861	97.429	0.583
comA	Ralstonia pseudosolanacearum GMI1000	37.5	100	0.394