Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY46_RS07890 Genome accession   NZ_CP087165
Coordinates   1699397..1700032 (+) Length   211 a.a.
NCBI ID   WP_138221286.1    Uniprot ID   -
Organism   Pseudomonas sichuanensis strain B21-052     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1694397..1705032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY46_RS07870 (LOY46_07865) - 1694400..1695332 (+) 933 WP_258706000.1 ABC transporter ATP-binding protein -
  LOY46_RS07875 (LOY46_07870) - 1695329..1696108 (+) 780 WP_125463214.1 ABC transporter permease -
  LOY46_RS07880 (LOY46_07875) - 1695992..1696618 (-) 627 WP_125463215.1 DUF2062 domain-containing protein -
  LOY46_RS07885 (LOY46_07880) comA 1696762..1698981 (+) 2220 WP_258706001.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY46_RS07890 (LOY46_07885) exbB 1699397..1700032 (+) 636 WP_138221286.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY46_RS07895 (LOY46_07890) - 1700029..1700463 (+) 435 WP_125463217.1 biopolymer transporter ExbD -
  LOY46_RS07900 (LOY46_07895) lpxK 1700463..1701467 (+) 1005 WP_258706002.1 tetraacyldisaccharide 4'-kinase -
  LOY46_RS07905 (LOY46_07900) - 1701508..1701693 (+) 186 WP_125463219.1 Trm112 family protein -
  LOY46_RS07910 (LOY46_07905) kdsB 1701690..1702454 (+) 765 WP_125463220.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY46_RS07915 (LOY46_07910) - 1702454..1702918 (+) 465 WP_258706003.1 low molecular weight protein-tyrosine-phosphatase -
  LOY46_RS07920 (LOY46_07915) murB 1702915..1703934 (+) 1020 WP_258706004.1 UDP-N-acetylmuramate dehydrogenase -
  LOY46_RS07925 (LOY46_07920) - 1704096..1704890 (-) 795 WP_258706005.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=627066 LOY46_RS07890 WP_138221286.1 1699397..1700032(+) (exbB) [Pseudomonas sichuanensis strain B21-052]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627066 LOY46_RS07890 WP_138221286.1 1699397..1700032(+) (exbB) [Pseudomonas sichuanensis strain B21-052]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGTTGCCATGGCAATCGTCGT
TGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTATAT
CAGCACCCTCGGCACCATCGCTGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTCGCCGGTGGTATTTCCAAGGCCCTGGTGACCACGGCC
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGTTGCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825