Detailed information NTG0626912

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LN139_RS17655
• Genome accession: NZ_CP087138
• Coordinates: 3761512..3762870 (+)
• Length: 452 a.a.
• NCBI ID: WP_236355403.1
• Uniprot ID: -
• Organism: Pseudomonas sp. KNUC1026
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3756512..3767870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LN139_RS17630 (LN139_17630)	pgeF	3756770..3757495 (-)	726	WP_236360485.1	peptidoglycan editing factor PgeF	-
LN139_RS17635 (LN139_17635)	rluD	3757501..3758461 (-)	961	Protein_3500	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LN139_RS17640 (LN139_17640)	-	3758624..3759643 (+)	1020	WP_236355401.1	outer membrane protein assembly factor BamD	-
LN139_RS17645 (LN139_17645)	-	3759699..3759935 (+)	237	WP_236355402.1	PP0621 family protein	-
LN139_RS17650 (LN139_17650)	pilS	3759961..3761508 (+)	1548	WP_236360487.1	HAMP domain-containing sensor histidine kinase	Regulator
LN139_RS17655 (LN139_17655)	pilR	3761512..3762870 (+)	1359	WP_236355403.1	sigma-54 dependent transcriptional regulator	Regulator
LN139_RS17660 (LN139_17660)	thiO	3762848..3763954 (-)	1107	WP_236355404.1	glycine oxidase ThiO	-
LN139_RS17665 (LN139_17665)	-	3763958..3764353 (-)	396	WP_236355405.1	type IV pilin protein	-
LN139_RS17670 (LN139_17670)	-	3764366..3767490 (-)	3125	Protein_3507	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49870.18 Da
• Isoelectric Point: 5.4431

>NTDB_id=626912 LN139_RS17655 WP_236355403.1 3761512..3762870(+) (pilR) [Pseudomonas sp. KNUC1026]
MSARQKILIVDDEPDIRELLEITLGRLKLDTRSARNVREARDWLSREAFDLCLTDMRLPDGTGLELVQHIQQRHAQLPVA
MITAFGSMDIAIQALKAGAFDFLTKPVDLARLRELVASALRLSQPPAVAAASEAGNGTRLLGQSAPMQSLRKQVDRLARS
QAPVYISGESGSGKELVARLIHEQGPRADKSFVPVNCGAIPSELMESEFFGHKKGSFSGAVEDKPGLFQAANGGTLFLDE
VADLPLPMQVKLLRAIQEKAVRSVGGQAEVVVDTRILCATHKDLAEEVAAGTFRQDLYYRLNVIELQVPPLRERREDIPL
ITARVLEKLAEGSGLAPVTLSPAAAEALKSYRFPGNVRELENMLERAYTLCEDDIIDVGDLRFKQATPQAAGGEGEPNLA
QVEDLEDYLEGIERKLILQALEETRWNRTAAAQRLNMSFRSMRYRLKKLGLD

Nucleotide

• Length: 1359 bp

>NTDB_id=626912 LN139_RS17655 WP_236355403.1 3761512..3762870(+) (pilR) [Pseudomonas sp. KNUC1026]
ATGAGTGCACGGCAAAAAATCCTGATCGTCGACGATGAGCCGGACATCCGCGAATTGCTCGAGATCACCCTCGGCCGCCT
CAAGCTCGACACTCGCAGCGCCCGCAACGTCAGGGAAGCCCGCGACTGGCTGAGCCGCGAGGCCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCAGACGGCACGGGCCTTGAGCTGGTGCAGCACATCCAGCAGCGCCATGCTCAGTTGCCGGTCGCG
ATGATCACTGCCTTCGGCAGCATGGACATCGCCATCCAGGCCCTCAAGGCCGGCGCGTTCGACTTTCTGACCAAGCCGGT
CGACCTTGCACGCCTGCGCGAGCTGGTGGCCAGTGCGCTGCGTCTGAGCCAGCCACCCGCCGTGGCAGCGGCCAGCGAGG
CCGGCAACGGCACCCGCTTGCTCGGCCAATCGGCGCCGATGCAGAGCCTGCGCAAGCAAGTCGACCGGCTGGCGCGCAGC
CAGGCGCCGGTTTACATCAGTGGTGAGTCCGGCAGCGGCAAGGAACTGGTCGCGCGGCTGATCCATGAGCAAGGCCCGCG
TGCCGACAAAAGCTTCGTGCCGGTCAACTGCGGTGCGATACCCAGCGAACTGATGGAGAGCGAATTTTTCGGCCACAAGA
AAGGCAGCTTCAGTGGCGCGGTAGAAGACAAGCCAGGTCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTTCTCGATGAG
GTCGCCGACCTGCCCCTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAGGCCGTGCGCAGCGTGGGCGGCCA
GGCAGAGGTGGTAGTCGATACGCGCATCCTGTGCGCCACGCACAAGGACCTGGCGGAGGAAGTCGCTGCCGGCACCTTCC
GCCAGGACCTCTACTACCGCCTGAACGTTATCGAATTGCAGGTGCCACCCCTGCGCGAGCGCCGCGAAGACATCCCGTTG
ATTACCGCGCGGGTGCTGGAAAAACTCGCAGAAGGCAGCGGCCTGGCGCCGGTGACGTTGTCACCCGCCGCCGCAGAGGC
ATTGAAGAGCTACCGCTTCCCCGGCAACGTGCGGGAGTTGGAGAACATGCTCGAGCGCGCTTACACGCTCTGCGAAGACG
ACATCATCGATGTGGGCGACCTGCGCTTCAAGCAGGCCACGCCACAGGCCGCAGGCGGCGAAGGTGAGCCGAACCTCGCT
CAGGTCGAGGACCTGGAGGATTACCTTGAGGGCATCGAGCGCAAACTGATCCTCCAGGCGCTGGAGGAAACCCGCTGGAA
CCGCACTGCAGCGGCTCAGCGGCTGAACATGTCATTCCGCTCGATGCGCTATCGCCTCAAGAAACTTGGGCTGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (409-449)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (140-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.333	99.558	0.77
pilR	Acinetobacter baumannii strain A118	48.913	100	0.498