Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LN139_RS17650 Genome accession   NZ_CP087138
Coordinates   3759961..3761508 (+) Length   515 a.a.
NCBI ID   WP_236360487.1    Uniprot ID   -
Organism   Pseudomonas sp. KNUC1026     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3754961..3766508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN139_RS17630 (LN139_17630) pgeF 3756770..3757495 (-) 726 WP_236360485.1 peptidoglycan editing factor PgeF -
  LN139_RS17635 (LN139_17635) rluD 3757501..3758461 (-) 961 Protein_3500 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LN139_RS17640 (LN139_17640) - 3758624..3759643 (+) 1020 WP_236355401.1 outer membrane protein assembly factor BamD -
  LN139_RS17645 (LN139_17645) - 3759699..3759935 (+) 237 WP_236355402.1 PP0621 family protein -
  LN139_RS17650 (LN139_17650) pilS 3759961..3761508 (+) 1548 WP_236360487.1 HAMP domain-containing sensor histidine kinase Regulator
  LN139_RS17655 (LN139_17655) pilR 3761512..3762870 (+) 1359 WP_236355403.1 sigma-54 dependent transcriptional regulator Regulator
  LN139_RS17660 (LN139_17660) thiO 3762848..3763954 (-) 1107 WP_236355404.1 glycine oxidase ThiO -
  LN139_RS17665 (LN139_17665) - 3763958..3764353 (-) 396 WP_236355405.1 type IV pilin protein -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 56789.76 Da        Isoelectric Point: 8.6383

>NTDB_id=626911 LN139_RS17650 WP_236360487.1 3759961..3761508(+) (pilS) [Pseudomonas sp. KNUC1026]
MLRLYHVYRLIIGLSLVLLISSEFDSRLMELANVTLFRAGSWAYLGLNLLAVLLLRHARHPVRAFTLAAADVIMLAGLFY
AGGGIPSGIGNLLIASVAMGNLLLRSRAGLLIAAMASIGIIYITFYLNYARGVAPNDYLQAGSLGVLCFAVALIVQGLTR
LLRTSESLAEQRASDVTSLEALNALILQRMRTGIIVLDAENRVQLANQGALALLGMPNLAGQLMAVHSAELIERLLQWRV
NPALRVKSLRLRDSGPSVQPNFVALRHGERQQTLVFLEDLSQVAQQAQQLKLAALGRLTASIAHEIRNPLGAISHAGQLL
QESTDLEQPDQRLVQIILDHSKRMNLLIENVLQLSRRRQAEPELLDLRAWLDTFSHDFNATARESQQLHIRIGLGNIRTR
MDPNHLTQVVTNLVENGLRYSGQQHALAQVWLHLYVEPASGLAVLDVLDDGPGFAPDKLQHIFEPFFTTETKGTGLGLYI
SRELCESNQAHLDYRPRDQGGSCLRITFAHANKQG

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=626911 LN139_RS17650 WP_236360487.1 3759961..3761508(+) (pilS) [Pseudomonas sp. KNUC1026]
ATGCTGCGCCTCTACCACGTGTATCGGCTGATCATCGGCCTGTCGCTGGTGCTGCTGATTTCCAGCGAATTCGACAGCCG
GCTCATGGAGCTGGCCAACGTTACGCTGTTCCGCGCCGGCAGTTGGGCCTACCTGGGGCTCAACCTGCTAGCGGTGCTGC
TGTTGCGCCATGCCCGCCACCCGGTACGCGCCTTCACCCTGGCGGCAGCGGACGTGATCATGCTCGCCGGGCTGTTCTAC
GCCGGCGGCGGCATCCCCAGCGGCATCGGCAACCTGCTGATCGCCTCGGTGGCCATGGGCAACCTGCTGCTACGTAGCCG
TGCCGGCTTGCTGATCGCGGCCATGGCCTCTATCGGCATCATCTACATCACTTTCTACCTCAACTACGCGCGCGGTGTGG
CACCGAACGACTATCTGCAAGCCGGCTCGCTGGGCGTCCTGTGCTTTGCTGTGGCGCTGATCGTGCAGGGGCTCACGCGC
CTGCTGCGCACCAGTGAGAGCCTTGCCGAGCAGCGCGCCAGCGATGTCACCAGCCTCGAAGCGCTCAATGCCCTGATCCT
GCAACGCATGCGCACCGGCATCATCGTGCTCGACGCCGAGAACCGCGTGCAGCTGGCCAACCAGGGCGCGCTGGCGTTGC
TCGGCATGCCTAACCTGGCCGGCCAACTGATGGCGGTGCATTCGGCAGAGCTGATCGAGCGGCTGCTGCAGTGGCGCGTG
AACCCGGCGCTGCGGGTCAAGAGTTTGCGCCTCAGGGACAGCGGCCCTTCGGTGCAACCCAATTTCGTGGCGCTGCGCCA
CGGCGAGCGCCAGCAGACGCTGGTGTTCCTGGAAGACCTGTCGCAGGTCGCGCAACAAGCGCAGCAGCTCAAGCTCGCAG
CGCTGGGCAGGCTCACCGCCAGCATCGCCCATGAAATCCGCAATCCCCTGGGCGCCATCAGCCATGCCGGGCAACTGTTG
CAGGAATCCACCGACCTGGAACAGCCCGATCAACGGCTGGTGCAGATCATTCTGGACCACTCCAAGCGGATGAACCTGCT
GATCGAAAACGTGTTGCAGCTGTCTCGGCGGCGCCAGGCAGAGCCTGAGCTGTTGGATCTGCGGGCCTGGCTGGATACCT
TCAGCCATGACTTCAACGCGACGGCACGCGAAAGCCAGCAGCTGCACATACGCATAGGCCTGGGCAACATTCGAACGCGC
ATGGACCCCAACCACCTGACCCAGGTGGTCACCAACCTTGTGGAAAACGGCCTGCGCTACAGCGGCCAACAGCACGCGCT
GGCGCAGGTATGGCTGCACCTGTACGTCGAGCCCGCCAGCGGCCTGGCGGTGCTGGATGTGCTGGACGACGGCCCAGGGT
TTGCTCCCGACAAGCTGCAACACATCTTCGAACCATTCTTCACCACCGAGACCAAAGGCACGGGCCTTGGCCTGTACATC
TCCCGCGAGCTGTGCGAAAGCAACCAGGCCCACCTAGACTACAGGCCACGCGATCAGGGCGGCAGTTGCCTGCGCATTAC
CTTCGCCCACGCCAACAAACAAGGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(294-358)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(402-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.259

99.612

0.59