Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LN139_RS02510 Genome accession   NZ_CP087138
Coordinates   612293..614500 (+) Length   735 a.a.
NCBI ID   WP_236358455.1    Uniprot ID   -
Organism   Pseudomonas sp. KNUC1026     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607293..619500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN139_RS02495 (LN139_02495) - 609642..610265 (+) 624 WP_236358451.1 glutathione S-transferase -
  LN139_RS02500 (LN139_02500) - 610390..611323 (+) 934 Protein_490 ABC transporter ATP-binding protein -
  LN139_RS02505 (LN139_02505) - 611320..612096 (+) 777 WP_236358453.1 ABC transporter permease -
  LN139_RS02510 (LN139_02510) comA 612293..614500 (+) 2208 WP_236358455.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LN139_RS02515 (LN139_02515) exbB 614577..615212 (+) 636 WP_236358457.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LN139_RS02520 (LN139_02520) - 615209..615634 (+) 426 WP_236358459.1 biopolymer transporter ExbD -
  LN139_RS02525 (LN139_02525) lpxK 615634..616641 (+) 1008 WP_236358461.1 tetraacyldisaccharide 4'-kinase -
  LN139_RS02530 (LN139_02530) - 616668..616850 (+) 183 Protein_496 Trm112 family protein -
  LN139_RS02535 (LN139_02535) kdsB 616853..617614 (+) 762 WP_236360229.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LN139_RS02540 (LN139_02540) - 617614..618078 (+) 465 WP_236358463.1 low molecular weight protein-tyrosine-phosphatase -
  LN139_RS02545 (LN139_02545) murB 618075..619082 (+) 1008 WP_236358465.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79942.40 Da        Isoelectric Point: 10.0493

>NTDB_id=626901 LN139_RS02510 WP_236358455.1 612293..614500(+) (comA) [Pseudomonas sp. KNUC1026]
MAALAAGLLALRWLPALPTGWMLGLGALLAVVCLWRGHWLPGWFLAGLCWACLSAQWALDERLPPALHGETFWLEGRVTG
LPREDGRSVRFELRDVSARRAELPTRLRLSWFAGPPVRDGERWRLAVTLREPRGLVNPGGFDQEAWLLAQRIGAQGSVKD
GQRLQAATSWQWRERLAERLLAVPAQGYEAVIAALVLGDSRGLKPEQWQMLQATGTVHLLVISGQHIGVFAGLLYGLVAG
LARLGLWPARWPWLPCACLASMAGALGYGALAGFGVPVQRACLILAWVLLWRLTYRRPSLGLPLLGALCGVLLAEPLASL
RQGFWLSFAAVAILLLGFSGRLGGWPLWQAWLRPQWLTAIGLAPWLVALGLPVSVSGPLANLFAVPWVSLVVLPGALAGT
ALLLVWPWAGQGLLIGVGHALALLFGALEHLAGLAAPLEVPAPPGWAWPLIALGVLWWLAPAGVPLRWLGLPLMALLFWA
PRPAPPHGEAWVTQLDVGQGLAVLVRTRDHALLYDAGPTLGGSDAGQQVVVPSLRQLGVRRLDGLLISHGHLDHAGGATS
VLKALPTGWRRAGDPHTLPEGYDPCESGAQWDWNGVRFSQWRWQAAKEGNLASCVLLIEAGEQRLLLPGDLELPGEQALL
RERPDWRAEWLQAPHHGSKTSSSAALLDGLGVRQVMIPRGSANRFGHPHPQVLARYTARGIQIHDTAVHGALWLRLGSTE
PPERWRERPRFWRLP

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=626901 LN139_RS02510 WP_236358455.1 612293..614500(+) (comA) [Pseudomonas sp. KNUC1026]
ATGGCTGCATTGGCTGCCGGGCTGCTGGCATTGCGCTGGCTGCCGGCGTTGCCGACAGGTTGGATGTTGGGGCTAGGGGC
GTTGTTGGCAGTGGTTTGCCTGTGGCGCGGGCATTGGCTGCCGGGATGGTTCCTGGCGGGGCTGTGCTGGGCCTGCCTGT
CGGCGCAATGGGCGCTCGATGAGCGGCTGCCGCCGGCGCTGCACGGTGAAACGTTCTGGCTGGAAGGGCGTGTCACCGGC
CTGCCGCGTGAGGACGGGCGCAGCGTGCGCTTCGAGCTGCGGGATGTGAGCGCGCGCCGCGCCGAATTGCCCACGCGCCT
GCGCCTGAGCTGGTTCGCAGGCCCGCCGGTGCGCGATGGCGAACGCTGGCGCCTGGCGGTGACCCTGCGCGAGCCGCGGG
GCCTGGTGAACCCTGGCGGCTTCGATCAGGAAGCCTGGCTGTTGGCGCAACGCATTGGCGCGCAGGGCAGTGTGAAAGAT
GGTCAACGCCTACAGGCCGCCACCTCATGGCAATGGCGTGAGCGCCTGGCCGAACGCCTGCTGGCGGTGCCCGCTCAAGG
CTACGAGGCAGTGATCGCGGCGTTGGTGCTAGGTGACTCCCGTGGGCTGAAACCCGAGCAATGGCAGATGCTGCAGGCCA
CCGGCACGGTGCATTTGCTGGTGATTTCCGGCCAGCACATCGGTGTGTTCGCGGGGCTGCTCTACGGCTTGGTGGCGGGC
CTGGCTCGGCTGGGGCTGTGGCCAGCGCGCTGGCCCTGGTTGCCCTGCGCGTGCCTGGCGAGCATGGCTGGCGCGTTGGG
GTATGGGGCATTGGCAGGCTTCGGCGTGCCCGTACAGCGCGCCTGCCTGATTCTGGCCTGGGTGCTGCTGTGGCGGCTGA
CCTATCGCAGGCCGAGCCTTGGGCTGCCGCTGCTGGGGGCACTGTGCGGGGTGCTGCTGGCCGAGCCATTGGCCAGCCTG
CGGCAGGGCTTCTGGCTGTCGTTCGCGGCGGTGGCGATATTGCTGCTGGGGTTCTCCGGGCGCCTGGGCGGCTGGCCGCT
CTGGCAAGCCTGGCTGCGCCCGCAATGGTTGACGGCCATAGGCCTGGCGCCCTGGCTGGTGGCACTTGGGCTGCCGGTCA
GCGTCAGCGGGCCGTTGGCGAACCTGTTTGCCGTGCCTTGGGTGAGCCTGGTGGTTTTGCCGGGCGCGCTGGCCGGTACG
GCGCTGCTGCTGGTGTGGCCGTGGGCGGGGCAGGGGCTGCTGATTGGCGTGGGGCATGCCTTGGCGTTGTTGTTTGGCGC
ACTCGAGCACTTGGCGGGCCTGGCTGCGCCTCTGGAAGTCCCCGCGCCGCCAGGCTGGGCCTGGCCGCTGATCGCCCTGG
GCGTGCTGTGGTGGCTGGCACCGGCTGGGGTGCCGCTGCGCTGGCTTGGCCTGCCGCTGATGGCGCTGCTGTTCTGGGCA
CCCCGCCCGGCCCCGCCGCACGGCGAGGCCTGGGTCACTCAACTGGATGTCGGCCAAGGCCTGGCGGTGCTGGTGCGCAC
CCGTGACCACGCGTTGCTGTACGACGCCGGGCCCACCCTTGGCGGCAGCGACGCCGGCCAGCAGGTGGTGGTGCCCAGCC
TTCGGCAACTGGGCGTGCGCAGGCTCGACGGCCTGCTGATCAGCCACGGCCACCTGGACCACGCCGGTGGTGCCACCAGC
GTGCTCAAAGCCTTGCCTACTGGCTGGCGCCGCGCTGGCGACCCGCACACCCTGCCCGAGGGCTACGACCCCTGCGAAAG
CGGCGCGCAATGGGATTGGAACGGCGTGCGCTTCAGCCAGTGGCGCTGGCAGGCGGCGAAGGAGGGCAACCTTGCCTCGT
GCGTGCTGCTGATCGAAGCCGGCGAGCAGCGCCTGTTGCTGCCCGGCGATCTGGAACTGCCAGGCGAACAGGCGTTGCTG
CGCGAGCGCCCCGATTGGCGCGCAGAGTGGCTGCAAGCACCTCATCACGGCAGCAAGACCTCCTCCAGTGCAGCACTGCT
CGACGGCCTGGGTGTGCGACAGGTGATGATCCCGCGCGGCAGTGCCAACCGTTTTGGCCATCCGCATCCGCAGGTGCTGG
CCCGCTATACGGCGCGCGGCATCCAGATACACGACACCGCCGTGCATGGCGCACTGTGGCTACGCCTGGGCAGCACCGAG
CCGCCTGAGCGCTGGCGCGAGCGGCCACGCTTCTGGCGTTTGCCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(195-460)

Domain of unknown function (DUF4131) (DUF4131)

(19-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-667)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

55.989

97.687

0.547
  comA Ralstonia pseudosolanacearum GMI1000

35.438

100

0.374