Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LN139_RS02515 Genome accession   NZ_CP087138
Coordinates   614577..615212 (+) Length   211 a.a.
NCBI ID   WP_236358457.1    Uniprot ID   -
Organism   Pseudomonas sp. KNUC1026     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 609577..620212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN139_RS02495 (LN139_02495) - 609642..610265 (+) 624 WP_236358451.1 glutathione S-transferase -
  LN139_RS02500 (LN139_02500) - 610390..611323 (+) 934 Protein_490 ABC transporter ATP-binding protein -
  LN139_RS02505 (LN139_02505) - 611320..612096 (+) 777 WP_236358453.1 ABC transporter permease -
  LN139_RS02510 (LN139_02510) comA 612293..614500 (+) 2208 WP_236358455.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LN139_RS02515 (LN139_02515) exbB 614577..615212 (+) 636 WP_236358457.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LN139_RS02520 (LN139_02520) - 615209..615634 (+) 426 WP_236358459.1 biopolymer transporter ExbD -
  LN139_RS02525 (LN139_02525) lpxK 615634..616641 (+) 1008 WP_236358461.1 tetraacyldisaccharide 4'-kinase -
  LN139_RS02530 (LN139_02530) - 616668..616850 (+) 183 Protein_496 Trm112 family protein -
  LN139_RS02535 (LN139_02535) kdsB 616853..617614 (+) 762 WP_236360229.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LN139_RS02540 (LN139_02540) - 617614..618078 (+) 465 WP_236358463.1 low molecular weight protein-tyrosine-phosphatase -
  LN139_RS02545 (LN139_02545) murB 618075..619082 (+) 1008 WP_236358465.1 UDP-N-acetylmuramate dehydrogenase -
  LN139_RS02550 (LN139_02550) - 619091..619891 (+) 801 WP_236358467.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.05 Da        Isoelectric Point: 6.8772

>NTDB_id=626902 LN139_RS02515 WP_236358457.1 614577..615212(+) (exbB) [Pseudomonas sp. KNUC1026]
MWELVKAGGWMMVPIILSSVVALAIVAERLWTLRASRVAPDHLVGQVWRWIKDKQLNKERLKELRAGSPLGEILAAGLAN
SRHGREIMKECIEESASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFTATGMSANASVLAGGISKALITTA
SGLMVGIPAVFFHRFLLRRVDELVVSMEQEAIKLVEVVQGERDVDMAEVAA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=626902 LN139_RS02515 WP_236358457.1 614577..615212(+) (exbB) [Pseudomonas sp. KNUC1026]
GTGTGGGAATTGGTCAAAGCCGGCGGTTGGATGATGGTGCCGATCATTCTGAGCTCGGTCGTGGCGCTGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGCCGTGTCGCTCCCGACCACCTGGTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGAACGCCTCAAGGAGCTGCGCGCCGGCTCGCCTCTGGGTGAGATTCTCGCCGCAGGCCTGGCCAAC
TCCCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAGGAGTCCGCCTCGCGCGTGATTCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACGGTACTCGGCATGATCGACATCTTCA
GCGCCTTCACCGCCACCGGCATGAGCGCCAACGCCTCGGTGCTCGCCGGCGGTATTTCCAAAGCGCTGATCACCACGGCC
TCGGGCCTGATGGTCGGTATTCCTGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGGGTCGACGAACTGGTGGTGAGCAT
GGAGCAAGAGGCGATCAAACTGGTGGAAGTGGTGCAGGGCGAGCGTGACGTCGACATGGCCGAGGTGGCTGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.808

98.578

0.787