Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LDL65_RS28090 Genome accession   NZ_CP087111
Coordinates   6250729..6252954 (-) Length   741 a.a.
NCBI ID   WP_161549638.1    Uniprot ID   -
Organism   Pseudomonas palleroniana strain X49     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6245729..6257954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDL65_RS28055 (LDL65_28055) murB 6246098..6247117 (-) 1020 WP_161549635.1 UDP-N-acetylmuramate dehydrogenase -
  LDL65_RS28060 (LDL65_28060) - 6247114..6247578 (-) 465 WP_060755620.1 low molecular weight protein-tyrosine-phosphatase -
  LDL65_RS28065 (LDL65_28065) kdsB 6247578..6248342 (-) 765 WP_161549636.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LDL65_RS28070 (LDL65_28070) - 6248339..6248524 (-) 186 WP_003174668.1 Trm112 family protein -
  LDL65_RS28075 (LDL65_28075) lpxK 6248549..6249559 (-) 1011 WP_244699504.1 tetraacyldisaccharide 4'-kinase -
  LDL65_RS28080 (LDL65_28080) - 6249559..6249987 (-) 429 WP_104994120.1 biopolymer transporter ExbD -
  LDL65_RS28085 (LDL65_28085) exbB 6249984..6250619 (-) 636 WP_090370297.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LDL65_RS28090 (LDL65_28090) comA 6250729..6252954 (-) 2226 WP_161549638.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LDL65_RS28095 (LDL65_28095) - 6253090..6253605 (+) 516 WP_090370293.1 DUF2062 domain-containing protein -
  LDL65_RS28100 (LDL65_28100) - 6253609..6254967 (-) 1359 WP_244699506.1 sensor histidine kinase -
  LDL65_RS28105 (LDL65_28105) - 6254954..6255682 (-) 729 WP_060755628.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80301.22 Da        Isoelectric Point: 10.8447

>NTDB_id=626685 LDL65_RS28090 WP_161549638.1 6250729..6252954(-) (comA) [Pseudomonas palleroniana strain X49]
MRTGMFALALGLLTLRWLPALPPVGGVLAMLVLALMLLPWRSYPLAFFLLGLSWACISAQWALNDRLLPALDGQTRWVEG
RVTGLPQQTSSGVRFELSDSRSRHARLPKRIRVSWHGGPAVRSGERWRLAVTLKRPSGLLNFHGFDYEAWLLAQRIGAIA
SVKDGQRLAPARDAWRDSLRQRLMSVDMQNRQGAVTALVLGDGSGLDAQDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGGWPHALPWLPWACGLAFAAALGYGLLAGLGVPVQRACMMVALVLLWRLRFRHLGGWWPLLLAFNAVLVFEPL
ASLQPGFWLSFAAVAVLVLAFGARLGPWSVWQAWTRPQWLIALGLFPVLLVLGLPISLSAPVANLFAVPWVSLVVLPLAL
LGTALLGVPFVGENLLWLAGGALDGLFQGLTLLAARVPAWIPAEVPLGYWLVSLVGTVALLLPKGVPFRLLGWPMLLLAV
FPPRGPVPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGMIDSGARVVLPSLKKLGVERLDMMLLSHADADHAGGA
VAVAEGLPVGRVVGGETEGLPAVLAAQPCISGETWVWDGVSFALWQWPGALDGNPRSCVLQVQANGERLLLTGDIDRAAE
RAFLDTPLATPTDWLQAPHHGSRSSSSWPFVQRLAPKSVLISRGWGNAFGHPHASVMERYRAMGSRVYDSAEQGAVRVQL
GAFKPPVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=626685 LDL65_RS28090 WP_161549638.1 6250729..6252954(-) (comA) [Pseudomonas palleroniana strain X49]
ATGAGAACAGGGATGTTCGCGCTCGCACTCGGTTTGCTGACGTTGCGCTGGTTGCCGGCACTGCCGCCGGTCGGCGGGGT
GTTGGCGATGCTGGTGCTGGCCTTGATGTTATTGCCGTGGCGCAGCTATCCACTGGCGTTCTTTCTGCTGGGCCTGAGCT
GGGCTTGCATCAGCGCGCAGTGGGCGCTGAATGATCGATTGCTACCCGCGCTGGACGGGCAGACCCGCTGGGTCGAGGGC
CGTGTCACCGGGCTGCCGCAGCAGACGAGCAGCGGCGTGCGCTTCGAACTCAGCGACAGTCGGTCGCGCCATGCGCGTTT
GCCCAAGCGTATCCGGGTGTCCTGGCACGGTGGACCGGCGGTACGCAGTGGCGAACGCTGGCGCCTGGCAGTGACGCTCA
AACGACCGTCCGGCCTGCTCAACTTTCACGGTTTTGACTATGAGGCGTGGCTGCTGGCCCAGCGCATTGGCGCCATTGCG
TCTGTCAAGGACGGGCAGCGCCTGGCGCCGGCTCGCGATGCGTGGCGCGATAGCCTGCGCCAGCGGCTGATGAGCGTGGA
CATGCAAAATCGCCAAGGCGCCGTGACGGCGTTGGTGCTGGGGGACGGTTCCGGCTTGGATGCGCAGGATTGGCGGGTGC
TGCAGGACACCGGGACCGTGCACCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCAGGGTTGATTTACGGCCTG
GTGGCCGGGTTGGCGCGCTATGGTGGCTGGCCCCATGCGCTGCCGTGGCTGCCATGGGCATGCGGTTTGGCGTTTGCCGC
CGCGCTGGGTTATGGCCTGCTCGCCGGGTTGGGTGTGCCGGTGCAGCGGGCCTGCATGATGGTTGCCCTGGTGTTGCTGT
GGCGCCTGCGGTTCCGGCATTTGGGCGGCTGGTGGCCGTTGTTGCTGGCATTCAATGCGGTGCTGGTATTCGAGCCCTTG
GCCAGCCTGCAGCCGGGGTTCTGGTTGTCGTTTGCCGCAGTTGCGGTGCTGGTGCTGGCCTTCGGTGCACGTCTGGGCCC
CTGGAGCGTCTGGCAGGCATGGACCCGGCCCCAATGGCTGATCGCCCTCGGGTTGTTTCCGGTGTTGCTGGTGCTCGGCC
TGCCCATCAGCCTCAGCGCGCCGGTCGCCAACCTGTTTGCCGTGCCGTGGGTCAGCCTGGTGGTGCTGCCCCTGGCGCTG
CTGGGCACTGCGCTGCTAGGGGTGCCATTTGTCGGGGAGAACCTGCTGTGGCTGGCCGGTGGGGCACTGGATGGGCTGTT
CCAGGGTTTGACGCTGTTGGCTGCGCGCGTGCCCGCCTGGATACCGGCCGAAGTACCGTTGGGATATTGGCTGGTGAGCC
TTGTGGGTACCGTGGCATTGCTGCTGCCCAAGGGCGTGCCGTTCCGGTTGCTGGGTTGGCCGATGCTTCTGTTGGCAGTG
TTTCCTCCCAGGGGCCCGGTGCCCCATGGGCAGGTTGACGTGGTGCAACTGGACGTCGGCCAGGGCCAGGCATTGATTCT
GCGCACCCGTCATCACAGCTTGCTCTACGATGCCGGCCCTCGATCCGGGATGATTGATTCAGGGGCGCGAGTGGTCTTGC
CATCGTTGAAGAAACTCGGGGTCGAGCGGTTGGACATGATGTTGCTCAGCCATGCCGACGCCGACCATGCCGGCGGTGCG
GTCGCGGTGGCCGAGGGGCTGCCCGTCGGCCGGGTAGTGGGTGGCGAGACCGAAGGGCTGCCGGCTGTTCTCGCGGCTCA
GCCCTGTATCAGTGGCGAGACATGGGTGTGGGACGGTGTGTCGTTCGCGTTATGGCAATGGCCGGGTGCGCTCGACGGTA
ACCCCAGGTCATGTGTGTTACAGGTACAGGCCAATGGTGAGCGCCTGCTGCTCACCGGCGATATCGACCGTGCGGCAGAA
CGGGCTTTTCTCGACACGCCGCTGGCGACGCCAACCGACTGGCTGCAAGCCCCCCATCATGGCAGCCGCAGTTCTTCCTC
CTGGCCCTTCGTGCAACGGTTGGCACCCAAGTCGGTGTTGATCTCCAGAGGGTGGGGCAATGCATTCGGCCACCCTCACG
CGTCGGTAATGGAACGTTATCGGGCCATGGGCAGTCGGGTCTACGACAGCGCCGAACAGGGCGCGGTGCGTGTGCAATTG
GGCGCCTTCAAGCCGCCGGTCGTTGCGCGTAGTCAACGCCGTTTCTGGCGCGAACCGTTACCTTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.666

97.031

0.579
  comA Ralstonia pseudosolanacearum GMI1000

34.478

100

0.366