Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LDL65_RS28085 Genome accession   NZ_CP087111
Coordinates   6249984..6250619 (-) Length   211 a.a.
NCBI ID   WP_090370297.1    Uniprot ID   A0A423EPV8
Organism   Pseudomonas palleroniana strain X49     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6244984..6255619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDL65_RS28050 (LDL65_28050) - 6245367..6246038 (+) 672 WP_060755618.1 Bax inhibitor-1/YccA family protein -
  LDL65_RS28055 (LDL65_28055) murB 6246098..6247117 (-) 1020 WP_161549635.1 UDP-N-acetylmuramate dehydrogenase -
  LDL65_RS28060 (LDL65_28060) - 6247114..6247578 (-) 465 WP_060755620.1 low molecular weight protein-tyrosine-phosphatase -
  LDL65_RS28065 (LDL65_28065) kdsB 6247578..6248342 (-) 765 WP_161549636.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LDL65_RS28070 (LDL65_28070) - 6248339..6248524 (-) 186 WP_003174668.1 Trm112 family protein -
  LDL65_RS28075 (LDL65_28075) lpxK 6248549..6249559 (-) 1011 WP_244699504.1 tetraacyldisaccharide 4'-kinase -
  LDL65_RS28080 (LDL65_28080) - 6249559..6249987 (-) 429 WP_104994120.1 biopolymer transporter ExbD -
  LDL65_RS28085 (LDL65_28085) exbB 6249984..6250619 (-) 636 WP_090370297.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LDL65_RS28090 (LDL65_28090) comA 6250729..6252954 (-) 2226 WP_161549638.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LDL65_RS28095 (LDL65_28095) - 6253090..6253605 (+) 516 WP_090370293.1 DUF2062 domain-containing protein -
  LDL65_RS28100 (LDL65_28100) - 6253609..6254967 (-) 1359 WP_244699506.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=626684 LDL65_RS28085 WP_090370297.1 6249984..6250619(-) (exbB) [Pseudomonas palleroniana strain X49]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=626684 LDL65_RS28085 WP_090370297.1 6249984..6250619(-) (exbB) [Pseudomonas palleroniana strain X49]
GTGTGGGAATTGGTCAAATCCGGTGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
TGAACGCCTGTGGACCTTGCGCGCCAGCCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGGAAAAACTCAAGGAGCTGCGCGCCAACTCGCCCCTGGGGGAAATCCTCGCCGCCGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCTGCCCGGGTCATTCATGAGTTGGAACGCTACAT
CAACGCCCTCGGTACCATTGCCGCGATGGCGCCGTTGCTCGGCTTGCTGGGGACGGTGCTGGGTATGATCGACATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGTTGGCCGGTGGTATTTCCAAGGCGTTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCATCGGTGTTTTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGCGATGTGGACCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A423EPV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858