Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HQN46_RS00220 Genome accession   NZ_CP087103
Coordinates   40446..40730 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus toyonensis strain HA0190     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35446..45730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS00185 (HQN46_0000185) tmk 35599..36225 (+) 627 WP_000677213.1 dTMP kinase -
  HQN46_RS00190 (HQN46_0000190) holB 36261..37244 (+) 984 WP_000169572.1 DNA polymerase III subunit delta' -
  HQN46_RS00195 (HQN46_0000195) - 37250..38077 (+) 828 WP_000272428.1 stage 0 sporulation family protein -
  HQN46_RS00200 (HQN46_0000200) yabA 38092..38442 (+) 351 WP_000412058.1 DNA replication initiation control protein YabA -
  HQN46_RS00205 (HQN46_0000205) - 38564..39304 (+) 741 WP_001055362.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HQN46_RS00210 (HQN46_0000210) - 39291..39581 (+) 291 WP_000414346.1 GIY-YIG nuclease family protein -
  HQN46_RS00215 (HQN46_0000215) rsmI 39550..40425 (+) 876 WP_000267797.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HQN46_RS00220 (HQN46_0000220) abrB 40446..40730 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HQN46_RS00225 (HQN46_0000225) metG 41238..43220 (+) 1983 WP_230075166.1 methionine--tRNA ligase -
  HQN46_RS00230 (HQN46_0000230) - 43389..44156 (+) 768 WP_000895829.1 TatD family hydrolase -
  HQN46_RS00235 (HQN46_0000235) rnmV 44376..44933 (+) 558 WP_000692838.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=626587 HQN46_RS00220 WP_000843036.1 40446..40730(-) (abrB) [Bacillus toyonensis strain HA0190]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=626587 HQN46_RS00220 WP_000843036.1 40446..40730(-) (abrB) [Bacillus toyonensis strain HA0190]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTTGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851