Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BAPNAU_RS06765 Genome accession   NC_022530
Coordinates   1348250..1348585 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis NAU-B3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343250..1353585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAPNAU_RS06715 (BAPNAU_1279) comGC 1343482..1343748 (+) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene
  BAPNAU_RS06720 (BAPNAU_1280) comGD 1343738..1344175 (+) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAPNAU_RS06725 (BAPNAU_1281) comGE 1344159..1344473 (+) 315 WP_021494312.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAPNAU_RS06730 (BAPNAU_1282) comGF 1344487..1344882 (+) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  BAPNAU_RS06735 (BAPNAU_1283) comGG 1344883..1345260 (+) 378 WP_022552965.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAPNAU_RS06740 (BAPNAU_1284) - 1345317..1345496 (+) 180 WP_022552966.1 YqzE family protein -
  BAPNAU_RS06745 (BAPNAU_1285) - 1345537..1345866 (-) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BAPNAU_RS06750 (BAPNAU_1286) tapA 1346125..1346796 (+) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  BAPNAU_RS06755 (BAPNAU_1287) - 1346768..1347352 (+) 585 WP_022552967.1 signal peptidase I -
  BAPNAU_RS06760 (BAPNAU_1288) - 1347417..1348202 (+) 786 WP_007408329.1 TasA family protein -
  BAPNAU_RS06765 (BAPNAU_1289) sinR 1348250..1348585 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BAPNAU_RS06770 (BAPNAU_1290) sinI 1348619..1348792 (-) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  BAPNAU_RS06775 (BAPNAU_1291) - 1348969..1349763 (-) 795 WP_014418368.1 YqhG family protein -
  BAPNAU_RS06780 (BAPNAU_1292) - 1349785..1351455 (-) 1671 WP_038461530.1 SNF2-related protein -
  BAPNAU_RS06785 (BAPNAU_1293) gcvT 1351879..1352979 (+) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=62656 BAPNAU_RS06765 WP_003153104.1 1348250..1348585(-) (sinR) [Bacillus velezensis NAU-B3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=62656 BAPNAU_RS06765 WP_003153104.1 1348250..1348585(-) (sinR) [Bacillus velezensis NAU-B3]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment