Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N2A93_RS07085 Genome accession   NZ_CP104046
Coordinates   1387008..1387685 (-) Length   225 a.a.
NCBI ID   WP_003107273.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP14     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382008..1392685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A93_RS07070 (N2A93_07070) sodA 1382988..1383596 (-) 609 WP_003107270.1 superoxide dismutase SodA -
  N2A93_RS07075 (N2A93_07075) holA 1383706..1384734 (-) 1029 WP_003104123.1 DNA polymerase III subunit delta -
  N2A93_RS07080 (N2A93_07080) comEC/celB 1384781..1387015 (-) 2235 WP_239639201.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N2A93_RS07085 (N2A93_07085) comEA 1387008..1387685 (-) 678 WP_003107273.1 helix-hairpin-helix domain-containing protein Machinery gene
  N2A93_RS07090 (N2A93_07090) - 1387745..1388485 (-) 741 WP_003107274.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  N2A93_RS07095 (N2A93_07095) - 1388625..1389395 (+) 771 WP_003107275.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  N2A93_RS07100 (N2A93_07100) - 1389385..1389669 (+) 285 WP_003108195.1 GIY-YIG nuclease family protein -
  N2A93_RS07105 (N2A93_07105) - 1389683..1391680 (-) 1998 WP_003103019.1 KUP/HAK/KT family potassium transporter -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24870.51 Da        Isoelectric Point: 5.0449

>NTDB_id=626537 N2A93_RS07085 WP_003107273.1 1387008..1387685(-) (comEA) [Streptococcus parauberis strain KSP14]
MKEILTDIKQWYVNHYILGRIIAIIVCICLLFSLSLFVFGNSTADKQKEEDVIELRKEIIEVKEDKEQSQAESKSTDTSN
QIMVDLKGVVKQEGVYKLPADSRVTDLVKMAGGLTQDADRQAINLAQKLSDASVIYIARLGENKSVLPSSTVQAADAPSD
DEKININSATSDQLTKIPGIGEKRAHEIIEARDKMGGFKSLEDLTKISGIGKKTLEKMKDNLSIE

Nucleotide


Download         Length: 678 bp        

>NTDB_id=626537 N2A93_RS07085 WP_003107273.1 1387008..1387685(-) (comEA) [Streptococcus parauberis strain KSP14]
ATGAAAGAAATTCTAACAGATATAAAACAGTGGTATGTTAATCACTATATTCTAGGCAGAATCATCGCAATTATTGTTTG
TATTTGTCTTCTTTTTTCTCTATCTCTTTTTGTTTTTGGGAATAGCACAGCCGATAAACAAAAAGAAGAAGACGTGATTG
AATTAAGAAAAGAAATTATAGAAGTTAAAGAAGACAAGGAGCAGAGCCAAGCAGAATCAAAGTCGACTGATACAAGTAAC
CAAATTATGGTTGATTTGAAAGGGGTTGTTAAGCAAGAGGGGGTCTATAAGTTACCAGCAGATAGTCGAGTGACTGATTT
GGTCAAAATGGCCGGTGGGCTGACTCAAGATGCTGATAGGCAAGCCATCAATCTCGCTCAAAAATTATCCGATGCATCTG
TTATTTATATTGCTAGATTGGGTGAGAATAAATCAGTTTTACCCTCATCGACAGTCCAAGCTGCAGACGCACCTAGTGAT
GATGAAAAGATTAATATAAATAGTGCGACAAGTGATCAACTAACTAAAATTCCAGGGATTGGCGAAAAACGAGCGCATGA
AATTATCGAAGCTAGAGATAAAATGGGTGGCTTCAAAAGTCTGGAAGATTTAACCAAAATTTCTGGCATTGGTAAGAAAA
CACTTGAAAAAATGAAAGATAATTTAAGTATTGAATAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(84-137)

Helix-hairpin-helix motif (HHH_3)

(162-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

39.744

100

0.413
  comEA Lactococcus lactis subsp. cremoris KW2

36.957

100

0.378
  comEA/celA/cilE Streptococcus mitis NCTC 12261

35.043

100

0.364