Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BAPNAU_RS05610 Genome accession   NC_022530
Coordinates   1129177..1129929 (+) Length   250 a.a.
NCBI ID   WP_022552879.1    Uniprot ID   -
Organism   Bacillus velezensis NAU-B3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1124177..1134929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAPNAU_RS05595 (BAPNAU_1043) - 1124399..1124590 (-) 192 WP_003152639.1 hypothetical protein -
  BAPNAU_RS05600 (BAPNAU_1044) - 1125043..1127685 (+) 2643 WP_022552877.1 valine--tRNA ligase -
  BAPNAU_RS05605 (BAPNAU_1045) - 1127744..1129036 (+) 1293 WP_022552878.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BAPNAU_RS05610 (BAPNAU_1046) comC 1129177..1129929 (+) 753 WP_022552879.1 A24 family peptidase Machinery gene
  BAPNAU_RS05615 (BAPNAU_1047) - 1130056..1131057 (+) 1002 WP_022552880.1 SPOR domain-containing protein -
  BAPNAU_RS05620 (BAPNAU_1048) - 1131198..1131767 (+) 570 WP_012118105.1 Maf family protein -
  BAPNAU_RS05625 (BAPNAU_1049) radC 1131799..1132494 (+) 696 WP_007408165.1 DNA repair protein RadC -
  BAPNAU_RS05630 (BAPNAU_1050) mreB 1132586..1133599 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BAPNAU_RS05635 (BAPNAU_1051) mreC 1133630..1134493 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27249.96 Da        Isoelectric Point: 9.4293

>NTDB_id=62642 BAPNAU_RS05610 WP_022552879.1 1129177..1129929(+) (comC) [Bacillus velezensis NAU-B3]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=62642 BAPNAU_RS05610 WP_022552879.1 1129177..1129929(+) (comC) [Bacillus velezensis NAU-B3]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment