Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LM507_RS11040 | Genome accession | NZ_CP086726 |
| Coordinates | 2299298..2299825 (+) | Length | 175 a.a. |
| NCBI ID | WP_229022085.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain E533 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2287611..2329986 | 2299298..2299825 | within | 0 |
Gene organization within MGE regions
Location: 2287611..2329986
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LM507_RS10945 (LM507_10945) | glyA | 2287611..2288849 (+) | 1239 | WP_002356623.1 | serine hydroxymethyltransferase | - |
| LM507_RS10950 (LM507_10950) | upp | 2288981..2289610 (+) | 630 | WP_002356624.1 | uracil phosphoribosyltransferase | - |
| LM507_RS10955 (LM507_10955) | - | 2289716..2289988 (+) | 273 | WP_010820195.1 | SemiSWEET family transporter | - |
| LM507_RS10960 (LM507_10960) | - | 2290062..2290298 (-) | 237 | WP_002381528.1 | hypothetical protein | - |
| LM507_RS10970 (LM507_10970) | - | 2290654..2291823 (-) | 1170 | WP_033600913.1 | tyrosine-type recombinase/integrase | - |
| LM507_RS10975 (LM507_10975) | - | 2291937..2292551 (-) | 615 | WP_033600914.1 | SHOCT domain-containing protein | - |
| LM507_RS10980 (LM507_10980) | - | 2292565..2293299 (-) | 735 | WP_141893361.1 | DUF4950 domain-containing protein | - |
| LM507_RS10985 (LM507_10985) | - | 2293387..2293809 (-) | 423 | WP_141893359.1 | ImmA/IrrE family metallo-endopeptidase | - |
| LM507_RS10990 (LM507_10990) | - | 2293810..2294151 (-) | 342 | WP_141893357.1 | helix-turn-helix domain-containing protein | - |
| LM507_RS10995 (LM507_10995) | - | 2294440..2294631 (+) | 192 | WP_002371609.1 | hypothetical protein | - |
| LM507_RS11000 (LM507_11000) | - | 2294643..2294924 (+) | 282 | WP_141893355.1 | excisionase | - |
| LM507_RS11005 (LM507_11005) | - | 2294878..2295591 (+) | 714 | WP_229963211.1 | Rha family transcriptional regulator | - |
| LM507_RS11010 (LM507_11010) | - | 2295602..2295787 (+) | 186 | WP_002364665.1 | hypothetical protein | - |
| LM507_RS11015 (LM507_11015) | - | 2295799..2295972 (+) | 174 | WP_002364664.1 | hypothetical protein | - |
| LM507_RS15225 | - | 2296172..2296294 (+) | 123 | WP_002399179.1 | hypothetical protein | - |
| LM507_RS11020 (LM507_11020) | - | 2296278..2296757 (+) | 480 | WP_229022086.1 | siphovirus Gp157 family protein | - |
| LM507_RS11025 (LM507_11025) | - | 2296769..2297785 (+) | 1017 | WP_002381629.1 | AAA family ATPase | - |
| LM507_RS11030 (LM507_11030) | - | 2297790..2298431 (+) | 642 | WP_085345089.1 | putative HNHc nuclease | - |
| LM507_RS11035 (LM507_11035) | - | 2298451..2299293 (+) | 843 | WP_229022141.1 | DNA replication protein | - |
| LM507_RS11040 (LM507_11040) | ssb | 2299298..2299825 (+) | 528 | WP_229022085.1 | single-stranded DNA-binding protein | Machinery gene |
| LM507_RS11045 (LM507_11045) | - | 2299837..2300166 (+) | 330 | WP_174098288.1 | hypothetical protein | - |
| LM507_RS11050 (LM507_11050) | - | 2300186..2300392 (+) | 207 | WP_002395701.1 | hypothetical protein | - |
| LM507_RS11055 (LM507_11055) | - | 2300519..2301682 (+) | 1164 | WP_412030885.1 | N-6 DNA methylase | - |
| LM507_RS11060 (LM507_11060) | - | 2301675..2302631 (+) | 957 | WP_010730060.1 | site-specific integrase | - |
| LM507_RS11065 (LM507_11065) | - | 2302650..2303156 (+) | 507 | WP_010783692.1 | hypothetical protein | - |
| LM507_RS11070 (LM507_11070) | - | 2303426..2303932 (+) | 507 | WP_229022083.1 | hypothetical protein | - |
| LM507_RS11075 (LM507_11075) | - | 2303933..2304259 (+) | 327 | WP_229022082.1 | hypothetical protein | - |
| LM507_RS11080 (LM507_11080) | - | 2304259..2304483 (+) | 225 | WP_229022081.1 | hypothetical protein | - |
| LM507_RS11085 (LM507_11085) | - | 2304509..2304832 (+) | 324 | WP_229022080.1 | DNA-directed RNA polymerase subunit delta | - |
| LM507_RS11090 (LM507_11090) | - | 2304829..2305131 (+) | 303 | WP_174125860.1 | hypothetical protein | - |
| LM507_RS11095 (LM507_11095) | - | 2305143..2305391 (+) | 249 | WP_229022079.1 | hypothetical protein | - |
| LM507_RS11100 (LM507_11100) | - | 2305403..2305888 (+) | 486 | WP_137278656.1 | hypothetical protein | - |
| LM507_RS11105 (LM507_11105) | - | 2305885..2306202 (+) | 318 | WP_137278657.1 | replicase | - |
| LM507_RS11110 (LM507_11110) | - | 2306196..2306387 (+) | 192 | WP_229022078.1 | hypothetical protein | - |
| LM507_RS11115 (LM507_11115) | - | 2306388..2306807 (+) | 420 | WP_002404562.1 | transcriptional regulator | - |
| LM507_RS11120 (LM507_11120) | - | 2307081..2307803 (+) | 723 | WP_229022077.1 | hypothetical protein | - |
| LM507_RS11125 (LM507_11125) | - | 2307915..2308115 (+) | 201 | WP_229963276.1 | hypothetical protein | - |
| LM507_RS11130 (LM507_11130) | - | 2308169..2308630 (+) | 462 | WP_002405234.1 | terminase small subunit | - |
| LM507_RS11135 (LM507_11135) | - | 2308620..2309894 (+) | 1275 | WP_142960529.1 | PBSX family phage terminase large subunit | - |
| LM507_RS11140 (LM507_11140) | - | 2309907..2311382 (+) | 1476 | WP_229022076.1 | phage portal protein | - |
| LM507_RS11145 (LM507_11145) | - | 2311357..2312403 (+) | 1047 | WP_229022075.1 | phage head morphogenesis protein | - |
| LM507_RS11150 (LM507_11150) | - | 2312406..2312726 (+) | 321 | WP_104681295.1 | hypothetical protein | - |
| LM507_RS11155 (LM507_11155) | - | 2312945..2313574 (+) | 630 | WP_142959624.1 | DUF4355 domain-containing protein | - |
| LM507_RS11160 (LM507_11160) | - | 2313588..2314490 (+) | 903 | WP_016634610.1 | DUF5309 family protein | - |
| LM507_RS11165 (LM507_11165) | - | 2314514..2314750 (+) | 237 | WP_002402418.1 | hypothetical protein | - |
| LM507_RS11170 (LM507_11170) | - | 2314759..2315103 (+) | 345 | WP_002402417.1 | hypothetical protein | - |
| LM507_RS11175 (LM507_11175) | - | 2315100..2315477 (+) | 378 | WP_002402416.1 | hypothetical protein | - |
| LM507_RS11180 (LM507_11180) | - | 2315470..2315868 (+) | 399 | WP_002402415.1 | HK97 gp10 family phage protein | - |
| LM507_RS11185 (LM507_11185) | - | 2315872..2316246 (+) | 375 | WP_229022074.1 | DUF6838 family protein | - |
| LM507_RS11190 (LM507_11190) | - | 2316247..2317089 (+) | 843 | WP_113847605.1 | major tail protein | - |
| LM507_RS11195 (LM507_11195) | gpG | 2317142..2317495 (+) | 354 | WP_002364485.1 | phage tail assembly chaperone G | - |
| LM507_RS11200 (LM507_11200) | - | 2317744..2320641 (+) | 2898 | WP_229022140.1 | tape measure protein | - |
| LM507_RS11205 (LM507_11205) | - | 2320631..2321365 (+) | 735 | WP_229022073.1 | phage tail protein | - |
| LM507_RS11210 (LM507_11210) | - | 2321347..2324061 (+) | 2715 | WP_229022072.1 | phage tail spike protein | - |
| LM507_RS11215 (LM507_11215) | - | 2324076..2324984 (+) | 909 | WP_202236682.1 | phage baseplate upper protein | - |
| LM507_RS11220 (LM507_11220) | - | 2324977..2325294 (+) | 318 | WP_010783717.1 | hypothetical protein | - |
| LM507_RS11225 (LM507_11225) | - | 2325287..2325604 (+) | 318 | WP_002385669.1 | hypothetical protein | - |
| LM507_RS11230 (LM507_11230) | - | 2325604..2326113 (+) | 510 | WP_002394069.1 | hypothetical protein | - |
| LM507_RS11235 (LM507_11235) | - | 2326130..2326504 (+) | 375 | WP_010783718.1 | hypothetical protein | - |
| LM507_RS11240 (LM507_11240) | - | 2326504..2326641 (+) | 138 | WP_002399193.1 | XkdX family protein | - |
| LM507_RS11245 (LM507_11245) | - | 2326675..2326908 (+) | 234 | WP_002383824.1 | hemolysin XhlA family protein | - |
| LM507_RS11250 (LM507_11250) | - | 2326911..2327123 (+) | 213 | WP_010783719.1 | phage holin | - |
| LM507_RS11255 (LM507_11255) | - | 2327120..2328379 (+) | 1260 | WP_229963212.1 | LysM peptidoglycan-binding domain-containing protein | - |
| LM507_RS11265 (LM507_11265) | - | 2328583..2329326 (-) | 744 | WP_229022070.1 | hypothetical protein | - |
| LM507_RS11270 (LM507_11270) | - | 2329660..2329986 (-) | 327 | WP_002362235.1 | AzlD domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19339.24 Da Isoelectric Point: 4.7078
>NTDB_id=626158 LM507_RS11040 WP_229022085.1 2299298..2299825(+) (ssb) [Enterococcus faecalis strain E533]
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=626158 LM507_RS11040 WP_229022085.1 2299298..2299825(+) (ssb) [Enterococcus faecalis strain E533]
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTTGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTTGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.989 |
100 |
0.6 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.989 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
60.571 |
0.366 |