Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LN051_RS11210 Genome accession   NZ_CP086654
Coordinates   2288138..2288644 (-) Length   168 a.a.
NCBI ID   WP_229292578.1    Uniprot ID   -
Organism   Staphylococcus ratti strain CCM 9025     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2283138..2293644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN051_RS11190 (LN051_11190) - 2284330..2285550 (-) 1221 WP_229292575.1 glycerate kinase -
  LN051_RS11195 (LN051_11195) chrA 2285676..2286833 (-) 1158 WP_229292576.1 chromate efflux transporter -
  LN051_RS11200 (LN051_11200) - 2287094..2287474 (+) 381 WP_229292577.1 iron chaperone -
  LN051_RS11205 (LN051_11205) rpsR 2287848..2288090 (-) 243 WP_103345229.1 30S ribosomal protein S18 -
  LN051_RS11210 (LN051_11210) ssbA 2288138..2288644 (-) 507 WP_229292578.1 single-stranded DNA-binding protein Machinery gene
  LN051_RS11215 (LN051_11215) rpsF 2288668..2288964 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  LN051_RS11220 (LN051_11220) ychF 2289231..2290328 (-) 1098 WP_229292579.1 redox-regulated ATPase YchF -
  LN051_RS11225 (LN051_11225) - 2290335..2290541 (-) 207 WP_229292580.1 DUF951 domain-containing protein -
  LN051_RS11230 (LN051_11230) - 2290584..2291474 (-) 891 WP_229292581.1 mechanosensitive ion channel family protein -
  LN051_RS11235 (LN051_11235) - 2291502..2292326 (-) 825 WP_229292582.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18789.42 Da        Isoelectric Point: 5.1957

>NTDB_id=625975 LN051_RS11210 WP_229292578.1 2288138..2288644(-) (ssbA) [Staphylococcus ratti strain CCM 9025]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAINRTFTNSQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANNPSNDFQSYSQGFGGQQQGQNSSYQNNNNHTQNNDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=625975 LN051_RS11210 WP_229292578.1 2288138..2288644(-) (ssbA) [Staphylococcus ratti strain CCM 9025]
ATGCTTAATAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGCGTAGC
GACGTTCACATTAGCGATTAATCGCACGTTTACAAACAGCCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAAAACGTGAGCAATTTCTTGTTCAAAGGAAGTCTGGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTGTTCGTCACAGAGGTAGTGTGTGACAGTGTTCAATTCCTTGAACCGAAATC
ACAAAACCAACGTCATGCCAACAATCCAAGCAATGACTTCCAAAGTTATAGTCAAGGATTTGGTGGACAACAACAAGGCC
AAAATTCATCATATCAAAATAACAACAATCACACACAAAATAACGATAACCCATTTGCGAATGCGAATGGTCCAATCGAT
ATTAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.74

100

0.667
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.583
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.364

65.476

0.369