Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VIBNI_RS15215 Genome accession   NC_022528
Coordinates   3378431..3379063 (+) Length   210 a.a.
NCBI ID   WP_004399871.1    Uniprot ID   A0AAV2VTT7
Organism   Vibrio nigripulchritudo     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3373431..3384063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS15190 (VIBNI_A3201) - 3373848..3374444 (-) 597 WP_022551724.1 LysE family translocator -
  VIBNI_RS15195 (VIBNI_A3202) - 3374566..3375957 (+) 1392 WP_022551725.1 PLP-dependent aminotransferase family protein -
  VIBNI_RS15200 (VIBNI_A3203) - 3375954..3376976 (+) 1023 WP_022609446.1 hydrolase -
  VIBNI_RS15205 (VIBNI_A3204) - 3377008..3377220 (+) 213 WP_004399873.1 YheU family protein -
  VIBNI_RS15210 (VIBNI_A3205) - 3377318..3378187 (+) 870 WP_022551727.1 phosphoribulokinase -
  VIBNI_RS15215 (VIBNI_A3206) crp 3378431..3379063 (+) 633 WP_004399871.1 cAMP-activated global transcriptional regulator CRP Regulator
  VIBNI_RS15220 (VIBNI_A3207) rlmB 3379136..3379876 (-) 741 WP_022551728.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  VIBNI_RS15225 (VIBNI_A3208) rnr 3379894..3382353 (-) 2460 WP_022551729.1 ribonuclease R -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23639.39 Da        Isoelectric Point: 7.4009

>NTDB_id=62582 VIBNI_RS15215 WP_004399871.1 3378431..3379063(+) (crp) [Vibrio nigripulchritudo]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQTTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=62582 VIBNI_RS15215 WP_004399871.1 3378431..3379063(+) (crp) [Vibrio nigripulchritudo]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTCTGATTCATGCTGGTGAAAAGGCAGAGACCCTGTACTACATTGTGAAAGGTTCTGTTGCCGTACTGATCAAGG
ATGAAGAAGGCAAAGAAATGATCTTGTCTTACCTCAACCAAGGTGATTTTATCGGCGAACTTGGTCTGTTCGAAGAAGAC
CAGGAACGTACCGCTTGGGTACGTGCGAAAACCCCGTGTGAAGTAGCAGAAATTTCATTTAAGAAGTTCCGTCAGCTGAT
TCAGGTTAACCCTGATATCCTAATGCGCCTTTCTGCGCAAATGGCGAACCGTCTTCAAACAACAAGCCAGAAAGTGGGCG
ACCTTGCATTCCTAGACGTAACAGGTCGTATCGCTCAAACGCTTCTGAACCTTGCGAAGCAACCAGACGCAATGACTCAC
CCAGACGGTATGCAAATCAAGATTACCCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACAGTAGGTCGTAT
CCTGAAAATGCTGGAAGAGCAAAACCTCATTTCAGCACACGGTAAGACTATCGTTGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment