Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VIBNI_RS04400 Genome accession   NC_022528
Coordinates   978048..979439 (+) Length   463 a.a.
NCBI ID   WP_022603175.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 973048..984439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS04380 (VIBNI_A0908) rsxB 973232..973810 (-) 579 WP_004408179.1 electron transport complex subunit RsxB -
  VIBNI_RS04385 (VIBNI_A0909) rsxA 973810..974391 (-) 582 WP_022550090.1 electron transport complex subunit RsxA -
  VIBNI_RS04395 (VIBNI_A0912) uvrB 975766..977796 (+) 2031 WP_022550091.1 excinuclease ABC subunit UvrB -
  VIBNI_RS04400 (VIBNI_A0914) luxO 978048..979439 (+) 1392 WP_022603175.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VIBNI_RS04405 (VIBNI_A0915) - 979470..979817 (+) 348 WP_022550093.1 Hpt domain-containing protein -
  VIBNI_RS04410 (VIBNI_A0916) yvcK 979806..980693 (-) 888 WP_022550094.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  VIBNI_RS04415 (VIBNI_A0917) moaA 981018..982010 (+) 993 WP_022591758.1 GTP 3',8-cyclase MoaA -
  VIBNI_RS04420 (VIBNI_A0918) moaB 982087..982599 (+) 513 WP_004408168.1 molybdenum cofactor biosynthesis protein B -
  VIBNI_RS04425 (VIBNI_A0919) moaC 982609..983085 (+) 477 WP_004408166.1 cyclic pyranopterin monophosphate synthase MoaC -
  VIBNI_RS04430 (VIBNI_A0920) moaD 983085..983330 (+) 246 WP_004408164.1 molybdopterin synthase sulfur carrier subunit -
  VIBNI_RS04435 (VIBNI_A0921) moaE 983334..983795 (+) 462 WP_022550097.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51163.24 Da        Isoelectric Point: 4.9746

>NTDB_id=62567 VIBNI_RS04400 WP_022603175.1 978048..979439(+) (luxO) [Vibrio nigripulchritudo]
MQDTTSNPNPKYLLMVEDTASVAALYRSYLSPLGLDITIVGTGKDAVESLEERTPDLILLDLRLPDMTGMDVLSSVKSNY
PDVPVIFMTAHGSIDTAVEAMRKGAQDFLIKPCEADRLRVTVNNAIRKAGKLRSPSSEPDNNYQGFIGSSQTMQAVYRTI
DSAAPSKASVFITGESGTGKEVCAEAIHAASKRGENPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRDR
GEDVVEIAYSLLGYMSHEEGKGFVRFSQQVVDKFIEYEWPGNVRQLQNVLRNAVVLNHGSEITLNMLPPPLNLPSVSDLK
QVNAYDAKSTKLSVEEIRPLWLTEKSAIEQAIEACEGNIPKAAGYLDVSPSTLYRKLQAWKEQ

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=62567 VIBNI_RS04400 WP_022603175.1 978048..979439(+) (luxO) [Vibrio nigripulchritudo]
ATGCAAGACACAACTTCTAACCCCAATCCTAAATACCTATTGATGGTGGAGGATACCGCCTCAGTAGCAGCGCTCTATCG
ATCTTACCTCAGTCCACTGGGGCTGGACATTACTATTGTCGGAACAGGTAAAGATGCAGTTGAAAGTCTGGAAGAGCGAA
CACCTGACCTGATTCTTCTCGACTTACGCCTTCCTGATATGACGGGCATGGATGTCCTTTCTTCGGTGAAATCAAATTAC
CCTGATGTCCCTGTCATTTTTATGACCGCGCACGGTTCAATCGACACCGCTGTTGAGGCAATGCGTAAGGGTGCTCAGGA
CTTTTTAATTAAGCCTTGTGAGGCAGACCGCCTACGTGTAACAGTCAATAACGCCATTCGCAAAGCAGGGAAACTTCGTT
CTCCAAGCAGCGAACCCGATAACAATTACCAGGGCTTTATTGGCAGTAGCCAGACCATGCAGGCTGTTTACCGAACTATC
GACTCTGCGGCTCCCAGTAAAGCGTCGGTATTTATTACGGGCGAAAGTGGTACCGGTAAAGAAGTGTGTGCAGAAGCGAT
TCATGCCGCCAGTAAACGTGGTGAAAACCCGTTTATTGCCATTAACTGTGCCGCAATACCAAAAGACCTTATTGAAAGTG
AACTGTTTGGTCATGTTAAAGGGGCGTTTACCGGGGCATCTACCGATAGGCAAGGTGCCGCAGAGCTTGCAGACGGCGGT
ACGCTGTTCTTGGATGAACTGTGTGAAATGGATCTGGACCTGCAAACCAAGCTGCTTAGATTCATTCAAACGGGTACCTT
CCAAAAGGTTGGTTCTTCTAAAATGAAGAGTGTAGACGTACGCTTTGTGTGTGCGACTAACCGTGATCCTTGGAAAGAAG
TTCAGGAAGGTCGCTTCCGAGAAGATTTGTATTACCGTTTGTATGTCATTCCATTGCACCTTCCTCCTTTGCGAGACAGA
GGGGAAGATGTAGTAGAGATTGCTTATTCGTTACTAGGTTACATGTCTCATGAAGAGGGTAAAGGGTTTGTTCGGTTCTC
GCAGCAAGTCGTTGATAAATTTATTGAATACGAATGGCCGGGTAATGTTCGTCAGCTTCAGAATGTGCTTCGTAATGCCG
TAGTACTCAATCATGGTAGCGAGATCACATTAAACATGTTGCCACCACCATTAAATTTGCCTTCTGTATCAGATTTGAAG
CAAGTAAATGCATATGACGCAAAATCAACTAAACTCTCAGTAGAAGAAATTCGACCACTGTGGCTTACCGAAAAAAGTGC
GATAGAACAAGCAATAGAGGCCTGTGAAGGAAATATTCCAAAGGCTGCGGGTTATTTAGATGTCAGCCCATCGACCTTGT
ATCGCAAGCTACAAGCTTGGAAAGAACAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

82.511

96.328

0.795
  pilR Pseudomonas aeruginosa PAK

39.286

96.76

0.38

Multiple sequence alignment