Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LK342_RS07500 Genome accession   NZ_CP086574
Coordinates   1614346..1615047 (-) Length   233 a.a.
NCBI ID   WP_072292026.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609346..1620047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS07480 (LK342_07480) rpsT 1610255..1610506 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  LK342_RS07485 (LK342_07485) holA 1610556..1611530 (-) 975 WP_047526755.1 DNA polymerase III subunit delta -
  LK342_RS07490 (LK342_07490) comEC 1611587..1613788 (-) 2202 WP_047526757.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LK342_RS07495 (LK342_07495) - 1613793..1614254 (-) 462 WP_000439691.1 ComE operon protein 2 -
  LK342_RS07500 (LK342_07500) comEA 1614346..1615047 (-) 702 WP_072292026.1 ComEA family DNA-binding protein Machinery gene
  LK342_RS07505 (LK342_07505) - 1615087..1615803 (-) 717 WP_047526761.1 class I SAM-dependent methyltransferase -
  LK342_RS07510 (LK342_07510) rsfS 1615806..1616159 (-) 354 WP_001088023.1 ribosome silencing factor -
  LK342_RS07515 (LK342_07515) yqeK 1616160..1616744 (-) 585 WP_047430812.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LK342_RS07520 (LK342_07520) - 1616734..1617303 (-) 570 WP_047526764.1 nicotinate-nucleotide adenylyltransferase -
  LK342_RS07525 (LK342_07525) yhbY 1617306..1617596 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  LK342_RS07530 (LK342_07530) aroE 1617601..1618407 (-) 807 WP_047526766.1 shikimate dehydrogenase -
  LK342_RS07535 (LK342_07535) yqeH 1618420..1619520 (-) 1101 WP_001280131.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26349.98 Da        Isoelectric Point: 9.3383

>NTDB_id=625589 LK342_RS07500 WP_072292026.1 1614346..1615047(-) (comEA) [Staphylococcus argenteus strain RIVM_M046968]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEYTARDFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPIYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVVPQIGVNSVHEKN
GNTNNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKNVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=625589 LK342_RS07500 WP_072292026.1 1614346..1615047(-) (comEA) [Staphylococcus argenteus strain RIVM_M046968]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAATATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTATATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCGCATAAAGGACAAAAGAACGTTGTACCACAAATTGGAGTAAATAGTGTGCACGAAAAAAAT
GGGAACACAAATAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGATGATTTGA
AAAACGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

91.379

99.571

0.91
  comEA Staphylococcus aureus N315

91.379

99.571

0.91