Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LK342_RS07490 Genome accession   NZ_CP086574
Coordinates   1611587..1613788 (-) Length   733 a.a.
NCBI ID   WP_047526757.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606587..1618788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS07470 (LK342_07470) hemW 1606757..1607881 (-) 1125 WP_072661439.1 radical SAM family heme chaperone HemW -
  LK342_RS07475 (LK342_07475) lepA 1608086..1609909 (-) 1824 WP_000356945.1 translation elongation factor 4 -
  LK342_RS07480 (LK342_07480) rpsT 1610255..1610506 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  LK342_RS07485 (LK342_07485) holA 1610556..1611530 (-) 975 WP_047526755.1 DNA polymerase III subunit delta -
  LK342_RS07490 (LK342_07490) comEC 1611587..1613788 (-) 2202 WP_047526757.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LK342_RS07495 (LK342_07495) - 1613793..1614254 (-) 462 WP_000439691.1 ComE operon protein 2 -
  LK342_RS07500 (LK342_07500) comEA 1614346..1615047 (-) 702 WP_072292026.1 ComEA family DNA-binding protein Machinery gene
  LK342_RS07505 (LK342_07505) - 1615087..1615803 (-) 717 WP_047526761.1 class I SAM-dependent methyltransferase -
  LK342_RS07510 (LK342_07510) rsfS 1615806..1616159 (-) 354 WP_001088023.1 ribosome silencing factor -
  LK342_RS07515 (LK342_07515) yqeK 1616160..1616744 (-) 585 WP_047430812.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LK342_RS07520 (LK342_07520) - 1616734..1617303 (-) 570 WP_047526764.1 nicotinate-nucleotide adenylyltransferase -
  LK342_RS07525 (LK342_07525) yhbY 1617306..1617596 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  LK342_RS07530 (LK342_07530) aroE 1617601..1618407 (-) 807 WP_047526766.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 84982.08 Da        Isoelectric Point: 10.0998

>NTDB_id=625587 LK342_RS07490 WP_047526757.1 1611587..1613788(-) (comEC) [Staphylococcus argenteus strain RIVM_M046968]
MLYVALSMIVGVLWNSSKVLSTFLFILLLFIAYRKNKIVYAPISLFLIIFSSWYLHYSQQAVFNYINYIERNPQFNERAQ
VIQIQRQDSDTYKGRLSLKNEIYPFFLTVKKNFDLKKIESRNCIVKGQFKVNDNKFVTLKLQSIVVQSCLKSNQSNLIEK
HKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNFPLFVIKGIT
IIVLALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFTFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQ
QLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYFVDLSFNFH
DWLLDLFTRIKQSHFSIPKFNDWIFILFIISVYYIFWLLAKRKYRLVTFWTIIIMTLLITYPTNSHHKITMLNVGQGDSI
LYEGGKNQNVLIDTGGKVINDTKQPSFSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKG
YSSKTLLLLSKLSHKYNIKLMDVRQVSSFKLGDSSFQFFDSFIPNSRDKNEYSIITMITYQNKKALLMGDASKNNESLLL
KKYKLPEIDILKVGHHGSKTSSSKEFIEVIRPKISLISSGKNNMYHLPNIEVVKRLQGIRSRIYNSQQNGEVTIDLDENL
KVDSNSYGNASGL

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=625587 LK342_RS07490 WP_047526757.1 1611587..1613788(-) (comEC) [Staphylococcus argenteus strain RIVM_M046968]
TTGCTGTATGTCGCATTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCATTTT
ACTTTTGTTTATTGCTTATCGTAAAAATAAAATAGTTTATGCTCCTATTTCTCTCTTTTTAATCATTTTTTCCTCATGGT
ATTTACATTATTCACAACAAGCAGTATTTAATTATATCAATTATATTGAACGTAATCCTCAGTTTAATGAGCGTGCTCAA
GTAATCCAAATTCAACGTCAAGATAGTGACACATATAAAGGTAGGTTGAGTTTAAAGAATGAAATATATCCTTTCTTTCT
AACAGTTAAAAAGAATTTTGATTTAAAGAAAATTGAAAGTCGTAATTGTATTGTTAAAGGACAATTCAAAGTTAATGACA
ACAAGTTTGTAACTCTTAAATTACAAAGTATAGTTGTACAAAGCTGTCTAAAATCGAACCAGTCTAATTTAATTGAGAAA
CATAAACAGTTTATAATGAATCGAATTTATGATTCGGGTATTAAGTTTCCAGATCGTATTATGGCATTGATTACTGGTGA
CGTAAAAGAAATTAATGAGCAATTTAAGGAACGTGTTAAAGAGATAGGTATATATCATTTGCTGGCAGTAAGTGGCTCGC
ATATAGCTGCCATTGTATTCTTAATTTACCAACCTTTAAAACGATTAAATTTTCCTTTATTTGTCATTAAAGGAATTACA
ATCATTGTATTAGCTTTGTTTGCTCAATACACAAATTATGCACCTAGTGCTGTAAGAGCTATAATAATGACAACACTAGT
ACTCCTTATTACTAAGCAAATTAAAATAAAGGGTATTCAGCTATTAGCATTTACTTTTATAATTATGTTTATTTTGAATC
CACTAGTTGTTTATGATATTGGATTTCAATTTTCATTCATCATTTCATTTTTTATTATGCTACTTTTTCCTTTTTTACAG
CAATTGTCAAAGTTACAATCATTATTCATAATTACTTTTATTGCACAATTAGCTTCATTTATCGTTGCCATTCCTAACTT
TCATCAACTTCAATGGGTGGGTTTTTTATCTAATTTGATTTTTGTACCGTACTATTCGATTATACTGTTTCCTCTATCAA
TTTTATTCTTTATTACAAGCCATTTTATTGTGGGCTTAACGCCGCTAAATTACTTTGTTGACCTAAGTTTCAATTTTCAT
GATTGGTTACTAGACCTATTCACTCGAATCAAGCAATCACATTTTTCTATTCCTAAGTTTAATGATTGGATATTTATATT
GTTTATAATTTCTGTTTATTACATATTTTGGTTATTGGCTAAACGTAAATATAGATTGGTTACGTTTTGGACTATAATTA
TTATGACATTATTAATAACATATCCAACAAATTCACATCACAAAATTACAATGTTAAATGTGGGGCAGGGAGATAGTATT
TTATATGAAGGCGGGAAGAACCAAAATGTCTTGATTGATACAGGTGGAAAAGTTATTAATGATACTAAACAACCTAGTTT
TTCAATTTCTAAATATCATATTTTACCAACGCTAAATGAAAGAGGGATAAATGAATTAGAGTATTTAATTTTAACACATC
CACACAATGACCATATTGGTGAAGTAGAATATATTATTAGTCATATTAAAATTAAGCATATAGTGATATACAATAAAGGA
TATAGTAGTAAAACATTGTTGTTATTATCAAAATTAAGCCATAAGTATAACATTAAACTTATGGATGTAAGACAAGTTAG
TAGTTTTAAACTTGGGGATAGTAGTTTTCAATTTTTTGATAGTTTTATTCCAAATAGCCGAGATAAAAATGAATACTCGA
TTATTACTATGATTACATATCAAAATAAAAAAGCTTTATTAATGGGTGATGCTAGTAAAAATAATGAATCTTTACTATTA
AAGAAATATAAATTGCCAGAGATTGATATTTTAAAAGTAGGACATCATGGAAGTAAGACAAGTAGTTCTAAAGAATTTAT
AGAAGTGATTAGGCCTAAAATAAGTTTGATTTCTTCTGGGAAGAACAATATGTATCATCTTCCTAACATAGAAGTTGTTA
AACGATTGCAAGGTATTCGCAGTCGCATTTACAATAGTCAACAAAACGGTGAAGTTACAATAGACTTAGATGAAAATTTA
AAAGTTGATTCAAACTCTTATGGAAATGCAAGTGGTTTATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(183-441)

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

95.771

100

0.958
  comEC Staphylococcus aureus MW2

95.498

100

0.955