Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LK336_RS02035 Genome accession   NZ_CP086572
Coordinates   389666..391867 (+) Length   733 a.a.
NCBI ID   WP_031787280.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M036020     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384666..396867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK336_RS01995 (LK336_01995) aroE 385047..385853 (+) 807 WP_031787284.1 shikimate dehydrogenase -
  LK336_RS02000 (LK336_02000) yhbY 385858..386148 (+) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  LK336_RS02005 (LK336_02005) - 386151..386720 (+) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  LK336_RS02010 (LK336_02010) yqeK 386710..387294 (+) 585 WP_031787283.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LK336_RS02015 (LK336_02015) rsfS 387295..387648 (+) 354 WP_001088023.1 ribosome silencing factor -
  LK336_RS02020 (LK336_02020) - 387651..388367 (+) 717 WP_031787282.1 class I SAM-dependent methyltransferase -
  LK336_RS02025 (LK336_02025) comEA 388407..389108 (+) 702 WP_072324129.1 ComEA family DNA-binding protein Machinery gene
  LK336_RS02030 (LK336_02030) - 389200..389661 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LK336_RS02035 (LK336_02035) comEC 389666..391867 (+) 2202 WP_031787280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LK336_RS02040 (LK336_02040) holA 391924..392898 (+) 975 WP_001282558.1 DNA polymerase III subunit delta -
  LK336_RS02045 (LK336_02045) rpsT 392948..393199 (-) 252 WP_001274017.1 30S ribosomal protein S20 -
  LK336_RS02050 (LK336_02050) lepA 393545..395368 (+) 1824 WP_000356945.1 translation elongation factor 4 -
  LK336_RS02055 (LK336_02055) hemW 395572..396696 (+) 1125 WP_000216825.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 85048.10 Da        Isoelectric Point: 10.0237

>NTDB_id=625526 LK336_RS02035 WP_031787280.1 389666..391867(+) (comEC) [Staphylococcus argenteus strain RIVM_M036020]
MLYVALSMIVGVLWNSSKVLSTFLFILLLFIAYRKNKIVYAPISLFLIIFSSWYLHYSHQAVFNYIDYIERNPQFNERAQ
VIQIQRQDSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNDNKFVTLKLQNIVVQSCLKSNQSNLIEK
HKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNFPLFVIKGIT
IIVLALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFTFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQ
QLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYFVDLSFNFH
DWLLELFTRIKQSHFSIPKFNDWIFILFIISVYYIFWLLAKRKYRLVTFWTIIIMTLLITYPTNLHHKITMLNVGQGDSI
LYEGGKNQNVLIDTGGKVINDTKQPSFSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKG
YSSKTLLLLSKLSHKYNIKLMDVRQISSFKLGDSSFQFFDSFIPNSRDKNEYSIITMITYQNKKALLMGDASKNNESLLL
KKYNLPEIDILKVGHHGSKTSSSKEFIEVIRPKISLISSGKNNMYHLPNIEVVKRLQGIRSRIYNSQQSGEVTIDLDENL
KVDSNSYGNASGL

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=625526 LK336_RS02035 WP_031787280.1 389666..391867(+) (comEC) [Staphylococcus argenteus strain RIVM_M036020]
TTGCTGTATGTCGCATTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCATTTT
ACTTTTGTTTATTGCTTATCGTAAAAATAAAATAGTTTATGCTCCTATTTCTCTCTTTTTAATCATTTTTTCCTCATGGT
ATTTACATTATTCACATCAAGCAGTATTTAATTATATCGATTATATTGAACGTAATCCTCAGTTTAATGAGCGTGCTCAA
GTAATCCAAATTCAACGTCAAGATAGTGACACATATAAAGGTAGGTTGAGTTTAAAGAATGAAATATATCCTTTCTTTTT
AACAGATAAAAAGAATTTTGATTTAAAGAAAATTGAAAGTCGTAATTGTATTGTTAAAGGACAATTCAAAGTTAATGACA
ATAAGTTTGTAACTCTTAAATTACAAAATATAGTTGTACAAAGCTGTCTAAAATCGAACCAGTCTAATTTAATTGAGAAA
CATAAACAGTTTATAATGAATCGAATTTATGATTCGGGTATTAAGTTTCCAGATCGTATTATGGCATTGATTACTGGTGA
CGTAAAAGAAATTAATGAGCAATTTAAGGAACGTGTTAAAGAGATAGGTATATATCATTTGCTGGCAGTAAGTGGCTCGC
ATATAGCTGCAATTGTATTCTTAATTTACCAACCTTTAAAACGATTAAATTTTCCTTTATTTGTCATTAAAGGAATTACA
ATCATTGTATTAGCTTTGTTTGCTCAATACACAAATTATGCACCTAGTGCTGTAAGAGCTATAATAATGACAACACTAGT
ACTCCTTATTACTAAGCAAATTAAAATAAAGGGTATTCAGCTATTAGCATTTACTTTTATAATTATGTTTATTTTGAATC
CACTAGTTGTTTATGATATTGGATTTCAATTTTCATTCATCATTTCATTTTTTATTATGCTACTTTTTCCTTTTTTACAG
CAATTGTCAAAGTTACAATCATTATTCATAATTACTTTTATTGCACAATTAGCTTCATTTATCGTTGCCATTCCTAACTT
TCATCAACTTCAATGGGTGGGTTTTTTATCTAATTTGATTTTTGTACCGTACTATTCGATTATACTGTTTCCTCTATCAA
TTTTATTCTTTATTACAAGCCATTTTATTGTGGGCTTAACGCCGCTAAATTACTTTGTTGACCTAAGTTTCAATTTTCAT
GATTGGTTACTAGAACTATTCACTCGAATCAAGCAATCACATTTTTCTATTCCTAAGTTTAATGATTGGATATTTATATT
GTTTATAATTTCTGTTTATTACATATTTTGGTTATTGGCTAAACGTAAATATAGATTGGTTACGTTTTGGACTATAATTA
TTATGACATTATTAATAACATATCCAACAAATTTACATCACAAAATTACAATGTTAAATGTGGGGCAGGGAGATAGTATT
TTATATGAAGGCGGGAAGAACCAAAATGTCTTGATTGATACAGGTGGAAAAGTGATTAATGATACTAAACAACCTAGTTT
TTCAATTTCTAAATATCATATTTTACCAACGCTAAATGAAAGAGGGATAAATGAATTAGAGTATTTAATTTTAACACATC
CACACAATGACCATATTGGTGAAGTTGAATATATTATTAGTCATATTAAAATTAAGCATATAGTGATATACAATAAAGGA
TATAGTAGTAAAACATTGTTGTTATTATCAAAATTAAGCCATAAGTATAACATTAAACTTATGGATGTAAGACAAATTAG
TAGTTTTAAACTTGGGGATAGTAGTTTTCAATTTTTTGATAGTTTTATTCCAAATAGCCGAGATAAAAATGAATATTCGA
TTATTACTATGATTACATATCAAAATAAAAAAGCTTTATTAATGGGAGATGCTAGTAAAAATAATGAATCTTTACTATTA
AAGAAATATAATTTGCCAGAGATTGATATTTTAAAAGTAGGACATCATGGAAGTAAGACAAGTAGTTCTAAAGAATTTAT
AGAGGTGATTAGGCCTAAAATAAGTTTGATTTCTTCTGGGAAGAACAATATGTATCATCTTCCTAACATAGAAGTTGTTA
AACGATTGCAAGGTATTCGCAGTCGCATTTACAATAGTCAACAAAGCGGTGAAGTTACAATAGACTTAGATGAAAATTTA
AAAGTTGATTCAAACTCTTATGGAAATGCAAGTGGTTTATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(183-441)

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

95.089

100

0.951
  comEC Staphylococcus aureus MW2

94.679

100

0.947