Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LK336_RS02025 Genome accession   NZ_CP086572
Coordinates   388407..389108 (+) Length   233 a.a.
NCBI ID   WP_072324129.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M036020     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383407..394108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK336_RS01990 (LK336_01990) yqeH 383934..385034 (+) 1101 WP_031787285.1 ribosome biogenesis GTPase YqeH -
  LK336_RS01995 (LK336_01995) aroE 385047..385853 (+) 807 WP_031787284.1 shikimate dehydrogenase -
  LK336_RS02000 (LK336_02000) yhbY 385858..386148 (+) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  LK336_RS02005 (LK336_02005) - 386151..386720 (+) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  LK336_RS02010 (LK336_02010) yqeK 386710..387294 (+) 585 WP_031787283.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LK336_RS02015 (LK336_02015) rsfS 387295..387648 (+) 354 WP_001088023.1 ribosome silencing factor -
  LK336_RS02020 (LK336_02020) - 387651..388367 (+) 717 WP_031787282.1 class I SAM-dependent methyltransferase -
  LK336_RS02025 (LK336_02025) comEA 388407..389108 (+) 702 WP_072324129.1 ComEA family DNA-binding protein Machinery gene
  LK336_RS02030 (LK336_02030) - 389200..389661 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LK336_RS02035 (LK336_02035) comEC 389666..391867 (+) 2202 WP_031787280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LK336_RS02040 (LK336_02040) holA 391924..392898 (+) 975 WP_001282558.1 DNA polymerase III subunit delta -
  LK336_RS02045 (LK336_02045) rpsT 392948..393199 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26367.06 Da        Isoelectric Point: 9.7027

>NTDB_id=625524 LK336_RS02025 WP_072324129.1 388407..389108(+) (comEA) [Staphylococcus argenteus strain RIVM_M036020]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEHTARDFENKDTALKQNTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHTKN
GNTKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=625524 LK336_RS02025 WP_072324129.1 388407..389108(+) (comEA) [Staphylococcus argenteus strain RIVM_M036020]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAACATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAACACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTACAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCTCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACACAAAAAAT
GGGAACACAAAAAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGA
AAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

91.81

99.571

0.914
  comEA Staphylococcus aureus N315

91.81

99.571

0.914