Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   N288_RS16470 Genome accession   NC_022524
Coordinates   3250292..3251983 (-) Length   563 a.a.
NCBI ID   WP_009794965.1    Uniprot ID   U5LFH7
Organism   Bacillus infantis NRRL B-14911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3245292..3256983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS16450 (N288_17760) - 3245462..3245722 (+) 261 WP_009794971.1 DUF2627 domain-containing protein -
  N288_RS24800 (N288_17765) - 3245877..3246011 (+) 135 WP_009794970.1 YycC family protein -
  N288_RS16455 (N288_17770) - 3246019..3247593 (-) 1575 WP_156917016.1 DUF342 domain-containing protein -
  N288_RS16460 (N288_17775) spo0A 3247828..3248616 (-) 789 WP_009794968.1 sporulation transcription factor Spo0A Regulator
  N288_RS16465 (N288_17785) spoIVB 3248884..3250179 (-) 1296 WP_009794966.1 SpoIVB peptidase -
  N288_RS16470 (N288_17790) recN 3250292..3251983 (-) 1692 WP_009794965.1 DNA repair protein RecN Machinery gene
  N288_RS16475 (N288_17795) ahrC 3252000..3252449 (-) 450 WP_009794964.1 transcriptional regulator AhrC/ArgR -
  N288_RS16480 (N288_17800) - 3252607..3253452 (-) 846 WP_009794963.1 TlyA family RNA methyltransferase -
  N288_RS16485 (N288_17805) dxs 3253456..3255348 (-) 1893 WP_009794962.1 1-deoxy-D-xylulose-5-phosphate synthase -
  N288_RS16495 (N288_17815) - 3255722..3256618 (-) 897 WP_009794960.1 polyprenyl synthetase family protein -
  N288_RS16500 (N288_17820) - 3256618..3256851 (-) 234 WP_009794959.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63562.26 Da        Isoelectric Point: 5.1610

>NTDB_id=62510 N288_RS16470 WP_009794965.1 3250292..3251983(-) (recN) [Bacillus infantis NRRL B-14911]
MLSELSIKNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSEFVRHGEQKAEIEGLFQIDGQDHPCYKK
SREFGIDIEDGMVVLRRDISRTGKSVCRVNGKLVTISALREIGSTIIDIHGQHEHQELMDETLHLSLLDQFGSEEIMPAL
HEYREVFQSYEQTAKKLKNLSENEQQMAHRLDLIQFQLEEIEGAGLKINEDEELYEEKTKLGNFERIYDSMQAGYTALQG
EQKGLDWIGLVMGHLQEAAELDPEYKEMADAVSNSFYMLEDVSSSLRSKLDFLEYDPARLNEIEERLTEINQLKRKYGKT
IEEILEYASGIEEEIETLQNKETHIDQLQKELSSLQKDLSLEAEQLSRLRRKSAKKLTSLIHKELKELYMSKTVFEVKFE
ELSSRGYHRNGADKIEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKI
HHVSRDSQVLCISHLPQVAAMADTHLFIAKSTRDGRTKTTVKPLNSEDKIKEIGRMISGVEITDLTKEHAKELLQLAQQI
KIT

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=62510 N288_RS16470 WP_009794965.1 3250292..3251983(-) (recN) [Bacillus infantis NRRL B-14911]
TTGCTAAGTGAATTATCCATTAAAAATTTCGCTATTATAGAAGCCCTTTCTGTTTCATTTGAAAAGGGCTTAACTGTATT
GACTGGGGAAACGGGCGCAGGCAAATCGATCATCATCGATGCCATCCACCTTTTAGTGGGCGGACGGGGGTCTTCGGAGT
TTGTCCGGCACGGCGAGCAGAAAGCTGAGATCGAGGGTCTTTTCCAAATAGACGGCCAGGATCATCCCTGTTATAAAAAA
TCAAGGGAATTTGGGATTGACATCGAGGACGGGATGGTGGTCCTTCGCCGGGATATCTCACGGACAGGCAAGAGTGTATG
CCGGGTCAATGGAAAGCTGGTGACCATTTCTGCACTCCGGGAAATCGGATCTACGATCATCGACATCCATGGACAGCATG
AGCACCAGGAATTGATGGATGAAACCCTGCATTTATCTTTGCTTGACCAGTTTGGCTCTGAGGAAATCATGCCGGCCCTG
CATGAATACCGGGAAGTATTCCAATCTTATGAACAAACAGCCAAAAAGCTCAAGAATTTGAGTGAGAACGAACAGCAGAT
GGCCCACAGGCTTGATCTGATTCAATTTCAGCTGGAGGAAATTGAGGGAGCCGGGCTGAAAATCAACGAAGACGAAGAGC
TTTATGAAGAAAAAACGAAGCTGGGGAACTTCGAAAGGATTTATGACAGCATGCAGGCTGGCTATACTGCTCTTCAAGGG
GAGCAAAAGGGGCTGGACTGGATCGGCCTTGTTATGGGCCATCTGCAGGAAGCAGCTGAACTGGATCCTGAATATAAGGA
AATGGCAGATGCTGTATCCAACAGTTTTTATATGCTTGAGGATGTTTCAAGCAGTCTGAGGAGCAAGCTTGATTTTCTTG
AATATGATCCTGCCAGGCTGAATGAGATTGAAGAAAGGCTGACAGAAATCAATCAGCTCAAAAGGAAATACGGCAAGACA
ATCGAGGAAATCCTTGAATATGCATCAGGGATAGAAGAAGAAATTGAGACATTGCAGAATAAGGAAACACATATTGATCA
GCTTCAAAAGGAGCTTTCTTCCCTTCAGAAGGATTTAAGCCTTGAAGCCGAGCAATTAAGCAGGCTTCGGAGAAAGAGCG
CCAAAAAGCTGACCTCTCTCATCCATAAGGAACTGAAAGAGCTGTATATGTCGAAAACGGTGTTCGAAGTGAAATTTGAG
GAATTGTCCAGCCGGGGCTACCATCGCAACGGTGCTGACAAGATAGAATTTTATATATCCACCAATCCGGGCGAACCGCT
CAAGCCCCTTTCCAAAGTCGCCTCGGGCGGTGAGCTGTCCAGAATCATGCTGGCTTTGAAAAGCATCTTCTCGAAGCATC
AGGGGGTCACATCGATTATCTTTGATGAGGTTGACACAGGGGTCAGCGGACGCGTCGCACAGGCAATCGCTGAGAAGATT
CACCATGTTTCAAGGGATTCACAGGTTCTCTGTATTTCCCACCTTCCACAGGTTGCTGCAATGGCAGATACACATCTGTT
CATCGCAAAGTCTACGCGTGATGGAAGAACTAAAACAACAGTGAAACCGCTCAATTCCGAGGATAAAATCAAGGAAATCG
GCCGGATGATATCCGGGGTGGAAATCACTGATTTGACGAAAGAGCATGCTAAGGAATTGCTCCAGCTTGCCCAGCAAATA
AAAATAACTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5LFH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.349

100

0.641

Multiple sequence alignment