Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   N288_RS16460 Genome accession   NC_022524
Coordinates   3247828..3248616 (-) Length   262 a.a.
NCBI ID   WP_009794968.1    Uniprot ID   U5LDF9
Organism   Bacillus infantis NRRL B-14911     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3242828..3253616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS16445 (N288_17755) - 3243235..3245313 (-) 2079 WP_009794972.1 sigma-54 interaction domain-containing protein -
  N288_RS16450 (N288_17760) - 3245462..3245722 (+) 261 WP_009794971.1 DUF2627 domain-containing protein -
  N288_RS24800 (N288_17765) - 3245877..3246011 (+) 135 WP_009794970.1 YycC family protein -
  N288_RS16455 (N288_17770) - 3246019..3247593 (-) 1575 WP_156917016.1 DUF342 domain-containing protein -
  N288_RS16460 (N288_17775) spo0A 3247828..3248616 (-) 789 WP_009794968.1 sporulation transcription factor Spo0A Regulator
  N288_RS16465 (N288_17785) spoIVB 3248884..3250179 (-) 1296 WP_009794966.1 SpoIVB peptidase -
  N288_RS16470 (N288_17790) recN 3250292..3251983 (-) 1692 WP_009794965.1 DNA repair protein RecN Machinery gene
  N288_RS16475 (N288_17795) ahrC 3252000..3252449 (-) 450 WP_009794964.1 transcriptional regulator AhrC/ArgR -
  N288_RS16480 (N288_17800) - 3252607..3253452 (-) 846 WP_009794963.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29208.59 Da        Isoelectric Point: 6.3917

>NTDB_id=62509 N288_RS16460 WP_009794968.1 3247828..3248616(-) (spo0A) [Bacillus infantis NRRL B-14911]
MRKIKVCIVDDNRELVGLLEEYIASQDDMEVSGVAHNGQECLEVLEETEPDVLVLDIIMPHLDGLGVLEKLRESRRSSMP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLAGHIRQVSGKSNPVIRKSQSSAYRSQESKPKNLDASITSIIHEIG
VPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMTKA
KPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 789 bp        

>NTDB_id=62509 N288_RS16460 WP_009794968.1 3247828..3248616(-) (spo0A) [Bacillus infantis NRRL B-14911]
GTGAGAAAAATAAAAGTATGTATCGTGGATGACAATCGCGAGCTTGTCGGGCTTCTGGAGGAATATATCGCATCCCAGGA
TGATATGGAAGTGAGCGGGGTGGCCCATAATGGCCAGGAATGCCTGGAGGTACTGGAAGAAACTGAACCGGACGTTCTAG
TCCTTGATATAATCATGCCGCATCTGGATGGGCTTGGAGTGCTTGAAAAGCTGCGTGAATCACGGAGATCATCGATGCCG
AATGTCATCATGCTTACAGCTTTCGGCCAGGAGGATGTTACGAAAAAAGCGGTGGATCTTGGGGCTTCCTATTTCATCCT
CAAACCATTTGATATGGAGAATCTCGCCGGACATATCCGCCAGGTAAGCGGCAAGTCCAACCCGGTCATCCGCAAGTCCC
AGTCATCCGCCTACAGAAGCCAAGAATCCAAGCCTAAAAATCTTGATGCAAGCATCACAAGCATCATTCATGAAATTGGT
GTGCCTGCCCACATTAAAGGTTATTTATACTTGCGCGAAGCAATATCCATGGTCTATAACGATATTGAACTGCTCGGATC
CATTACAAAGGTTCTTTACCCGGATATCGCCAAAAAGTATAATACCACTGCCAGCAGGGTGGAAAGGGCAATCCGCCATG
CGATCGAGGTAGCATGGAGCAGGGGGAATATCGATTCCATCTCTTCTCTTTTCGGCTACACTGTAAGCATGACAAAAGCC
AAGCCCACCAACTCGGAATTCATCGCGATGGTTGCTGATAAACTGCGCCTGGAGCATAAAGCTTCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(152-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5LDF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

82.772

100

0.844

Multiple sequence alignment